make_heatmap: Make Heatmap

In mworkentine/mattsUtils: Personal Utility Functions For Various Analysis

Description

Create a heatmap with the provide list of genes

Usage

make_heatmap(genes, ddr, gene_key = NULL, ...)

Arguments

genes	character vector of gene identifers that you wish to plot. ID type must match gene ids in the dds object.
ddr	valid DESeqTransform object used to extract the gene expression values. Recommended transform for visualization is the rlog transform. See the DESeq2 vignette for more information.
gene_key	a named list of gene symbols with the gene ids as names. Used as a lookup key to replace gene ids with symbols in the plot
...	additional parameters passed to pheatmap

mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.