cnetggplot: cnetggplot
In mworkentine/mattsUtils: Personal Utility Functions For Various Analysis
Description
This function makes a similar plot to the 'cnetplot' in the Bioconductor package 'clusterProfiler but does it with ggplot using the ggraph package
Usage
1
cnetggplot(res, dds_res, algorithm = "kk", exclude = NULL)
Arguments
res
A clusterProfiler results object
dds_res
DESeq results cleaned up with biobroom::tidy
algorithm
the layout algorithm for igraph
exclude
any pathways to exclude from the path
mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.
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Description
This function makes a similar plot to the 'cnetplot' in the Bioconductor package 'clusterProfiler but does it with ggplot using the ggraph package
Usage
1 | cnetggplot(res, dds_res, algorithm = "kk", exclude = NULL)
|
Arguments
res |
A clusterProfiler results object |
dds_res |
DESeq results cleaned up with biobroom::tidy |
algorithm |
the layout algorithm for igraph |
exclude |
any pathways to exclude from the path |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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