lfc_plot: Log fold-change plot

Description Usage Arguments

View source: R/microbiome_helpers.R

Description

Create plot that shows the log-fold change for various taxa

Usage

1
lfc_plot(x, tax_level = "Genus", colour = "Phylum", errors = FALSE)

Arguments

x

results from DESeq2 differential analysis, processed with biobroom

tax_level

the taxonomy level to group the y-axis by

colour

character, the taxonomy level to colour the points

errors

logical, should the error bars be included, defaults to FALSE


mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.