get_sig_taxa: Get a list of significant taxa from a DESeq analysis
In mworkentine/mattsUtils: Personal Utility Functions For Various Analysis
View source: R/microbiome_helpers.R
Description
Get a list of significant taxa from a DESeq analysis
Usage
1
get_sig_taxa(dds, physeq, cutoff = 0.05, ...)
Arguments
dds
valid DESeq2 object
physeq
valid phyloseq object
cutoff
pvalue cutoff
...
other parameters passed to DESeq2::results
mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.
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View source: R/microbiome_helpers.R
Description
Get a list of significant taxa from a DESeq analysis
Usage
1 | get_sig_taxa(dds, physeq, cutoff = 0.05, ...)
|
Arguments
dds |
valid DESeq2 object |
physeq |
valid phyloseq object |
cutoff |
pvalue cutoff |
... |
other parameters passed to |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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