vst_transform: VST Tranform a phyloseq object
In mworkentine/mattsUtils: Personal Utility Functions For Various Analysis
Description
Usage
Arguments
Value
View source: R/microbiome_helpers.R
Description
Uses the getVarianceStabilizedData function from DESeq2 to vst
transform an OTU table
Usage
1
vst_transform(physeq, size_factors = NULL)
Arguments
physeq
a phyloseq object where the OTU table is raw counts
Value
a phyloseq object with vst normalized OTU table
mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Value
View source: R/microbiome_helpers.R
Description
Uses the getVarianceStabilizedData function from DESeq2 to vst
transform an OTU table
Usage
1 | vst_transform(physeq, size_factors = NULL)
|
Arguments
physeq |
a phyloseq object where the OTU table is raw counts |
Value
a phyloseq object with vst normalized OTU table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.