prev_filt: Prevalance filter
In mworkentine/mattsUtils: Personal Utility Functions For Various Analysis
Description
Usage
Arguments
Value
View source: R/prevalance_filtering.R
Description
Filter OTUs base on prevalance, defined as the number of samples the OTU is
considered 'present'
Usage
1
prev_filt(physeq, prev_def, cutoff)
Arguments
physeq
a valid phyloseq object
prev_def
prevalance definition, the minimum count for an OTU to defined
as present
cutoff
the proportion of samples that an OTU must be present in to be
included
Value
a phyloseq object with OTUs below the cutoff filtered out
mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.
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Description Usage Arguments Value
View source: R/prevalance_filtering.R
Description
Filter OTUs base on prevalance, defined as the number of samples the OTU is considered 'present'
Usage
1 | prev_filt(physeq, prev_def, cutoff)
|
Arguments
physeq |
a valid phyloseq object |
prev_def |
prevalance definition, the minimum count for an OTU to defined as present |
cutoff |
the proportion of samples that an OTU must be present in to be included |
Value
a phyloseq object with OTUs below the cutoff filtered out
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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