ggheatmap: Make a ggplot heatmap

In mworkentine/mattsUtils: Personal Utility Functions For Various Analysis

Description

Function to create a ggplot heatmap where the rows and columns are ordered with heirarchical clustering, as in a traditional heatmap

Usage

ggheatmap(x, row, column, value, scale = c("row", "column"),
  filter_empty = TRUE, dist_method = "euclidean",
  hclust_method = "complete", scico_pal = "vik",
  cell_border = "grey50")

Arguments

x	dataframe
row	bare name of column to be the rows
column	bare name of column to be the columns
value	bare name of column with values to fill the cells and order the rows and columns
dist_method	distance method, passed to stats::dist
hclust_method	hierchical clustering method, passed to stats::hclust
scico_pal	colour palette to use from the package scico
cell_border	colour for the cell border, use NA to remove border

Value

a ggplot object

mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.