Files in mworkentine/mattsUtils
Personal Utility Functions For Various Analysis

.Rbuildignore
.gitignore
DESCRIPTION
LICENCE
NAMESPACE
R/cnetggplot.R R/get_monophyletic_subsets.R R/mattsUtils.R R/microbiome_helpers.R R/prevalance_filtering.R R/rnaseq_helpers.R README.md inst/rmarkdown/templates/RNA-Seq/skeleton/skeleton.Rmd
inst/rmarkdown/templates/RNA-Seq/template.yaml
inst/rmarkdown/templates/basic_project/skeleton/resources/UC-vet_med-rgb-400.png
inst/rmarkdown/templates/basic_project/skeleton/resources/header.html
inst/rmarkdown/templates/basic_project/skeleton/resources/plos.csl
inst/rmarkdown/templates/basic_project/skeleton/resources/references.bib
inst/rmarkdown/templates/basic_project/skeleton/resources/style.css
inst/rmarkdown/templates/basic_project/skeleton/skeleton.Rmd
inst/rmarkdown/templates/basic_project/template.yaml
man/add_taxonomy_column.Rd man/cnetggplot.Rd man/compute_spia.Rd man/get_monophyletic_subsets.Rd man/get_richness.Rd man/get_seq_stats.Rd man/get_sig_taxa.Rd man/lfc_plot.Rd man/make_heatmap.Rd man/make_ordination_plots.Rd man/make_prev_df.Rd man/make_taxa_colours.Rd man/mattsUtils.Rd man/plotPCA2.Rd man/plot_OTUs.Rd man/plot_bar2.Rd man/plot_diagnositics.Rd man/plot_featureCount_stats.Rd man/plot_genus_by_phylum.Rd man/plot_num_seqs.Rd man/prev_filt.Rd man/prev_plot.Rd man/psmelt_dplyr.Rd man/replace_counts.Rd man/rlog_norm_otus.Rd man/run_spia.Rd man/single_gene_plot.Rd man/subset_taxa2.Rd man/summarize_taxonomy.Rd man/veganotu.Rd man/vst_transform.Rd
mattsUtils.Rproj
tests/testthat.R
tests/testthat/dmelanogasterkeggSPIA.RData
tests/testthat/dmelanogasterreactomeSPIA.RData
tests/testthat/rnaseq_test_data.rda
tests/testthat/spia_res_dmelanogaster_kegg.rds
tests/testthat/spia_res_dmelanogaster_reactome.rds
tests/testthat/test_monophyletic_subsets.R tests/testthat/test_rnaseq_helpers.R
mworkentine/mattsUtils documentation built on Sept. 24, 2018, 10:12 p.m.