prev_plot: Prevelance Plot
In mworkentine/mattsUtils: Personal Utility Functions For Various Analysis
Description
Usage
Arguments
Value
View source: R/prevalance_filtering.R
Description
Plot the prevalance of each OTU, faceted by phyla
Usage
1
Arguments
physeq
a valid phyloseq object
cutoff
the proportion of samples that an OTU must be present in to be
included
prev_def
prevalance definition, the minimum count for an OTU to defined
as present
phylum
phylum/phyla to subset
Value
ggplot object
mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.
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Description Usage Arguments Value
View source: R/prevalance_filtering.R
Description
Plot the prevalance of each OTU, faceted by phyla
Usage
1 |
Arguments
physeq |
a valid phyloseq object |
cutoff |
the proportion of samples that an OTU must be present in to be included |
prev_def |
prevalance definition, the minimum count for an OTU to defined as present |
phylum |
phylum/phyla to subset |
Value
ggplot object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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