rlog_norm_otus: rlog normalize an OTU table
In mworkentine/mattsUtils: Personal Utility Functions For Various Analysis
Description
Usage
Arguments
Value
View source: R/microbiome_helpers.R
Description
Use the rlog function from DESeq2 to normalize an OTU table
Usage
1
rlog_norm_otus(physeq, remove_negs = FALSE)
Arguments
physeq
valid phyloseq object
remove_negs
remove negative values from the normalized OTU table (TRUE). Defaults to FALSE
Value
The original phyloseq object with the normalized OTU table
mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.
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Description Usage Arguments Value
View source: R/microbiome_helpers.R
Description
Use the rlog function from DESeq2 to normalize an OTU table
Usage
1 | rlog_norm_otus(physeq, remove_negs = FALSE)
|
Arguments
physeq |
valid phyloseq object |
remove_negs |
remove negative values from the normalized OTU table (TRUE). Defaults to FALSE |
Value
The original phyloseq object with the normalized OTU table
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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