add_taxonomy_column: Add taxonomy label
In mworkentine/mattsUtils: Personal Utility Functions For Various Analysis
Description
Usage
Arguments
Details
Value
View source: R/microbiome_helpers.R
Description
add a column to the taxonomy table of a phyloseq object that lists the
lowest rank taxonomy assigned to that OTU along with a prefix indicating
the taxonomic rank.
Usage
1
add_taxonomy_column(physeq, num_species = 2)
Arguments
physeq
a valid phyloseq object that contains a taxonomy table
num_species
the number of species to retain if more than one are identified
Details
Example: g:Pseudomonas
Value
a phyloseq object with an additional column on the taxonomy
table called "Taxonomy"
mworkentine/mattsUtils documentation built on May 23, 2019, 11:58 a.m.
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Description Usage Arguments Details Value
View source: R/microbiome_helpers.R
Description
add a column to the taxonomy table of a phyloseq object that lists the lowest rank taxonomy assigned to that OTU along with a prefix indicating the taxonomic rank.
Usage
1 | add_taxonomy_column(physeq, num_species = 2)
|
Arguments
physeq |
a valid phyloseq object that contains a taxonomy table |
num_species |
the number of species to retain if more than one are identified |
Details
Example: g:Pseudomonas
Value
a phyloseq object with an additional column on the taxonomy table called "Taxonomy"
R Package Documentation
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We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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