View source: R/ReturnAnalytes_InputPathways.R
getAnalyteFromPathway | R Documentation |
Use fast search algorithm to find all pathways from given analytes
getAnalyteFromPathway(pathway, match = "exact", analyte_type = "both")
pathway |
a string or a vector of strings that contains pathways of interest |
match |
type of matching to use, options are "exact" or "fuzzy". The default is "exact". |
analyte_type |
a string denoting the type of analyte to return ("gene", "metabolite", "both") |
a data.frame that contains all search results
## Not run: # To query one pathway: myanalytes <- getAnalyteFromPathway(pathway="sphingolipid metabolism") # To query multiple pathways: pkg.globals <- setConnectionToRaMP(dbname="ramp2",username="root",conpass="",host = "localhost") myanalytes <- getAnalyteFromPathway(pathway=c("De Novo Triacylglycerol Biosynthesis", "sphingolipid metabolism")) ## End(Not run)
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