getAnalyteFromPathway: Use fast search algorithm to find all pathways from given...

Description Usage Arguments Value Examples

View source: R/rampFastQueryTab2.R

Description

Use fast search algorithm to find all pathways from given analytes

Usage

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getAnalyteFromPathway(pathway, conpass = NULL, dbname = "ramp",
  username = "root", host = "localhost")

Arguments

pathway

a string or a vector of strings that contains pathways of interest

conpass

password for database access (string)

dbname

name of the mysql database (default is "ramp")

username

username for database access (default is "root")

host

host name for database access (default is "localhost")

Value

a data.frame that contains all search results

Examples

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## Not run: 
con <- connectToRaMP(dbname="ramp",username="root",conpass="mypassword")
getAnalyteFromPathway <- pathway="sphingolipid metabolism",conpass="mypassword")

## End(Not run)

ncats/RaMP-DB documentation built on Nov. 21, 2020, 7:41 p.m.