Files in ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)
.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
Jenkinsfile
NAMESPACE
R/OntologyQueryFunctions.R
R/ReturnAnalytes_InputPathways.R
R/ReturnGeneMetab_SameRxn.R
R/ReturnPathwaysEnrich_InputAnalytes.R
R/SourceDataFunctions.R
R/connectToRaMP.R
R/globals.R
R/metClassUtil.R
R/plottingFunctions.R
R/printingFunctions.R
R/processNewRamp.R
R/rampChemClassQueries.R
R/rampChemPropQueries.R
R/rampQueryHelper.R
R/rampReactionQueries.R
R/sysdata.rda
R/writingFunctions.R
README.md
RaMP.Rproj
inst/extdata/.DS_Store
inst/extdata/FT_data.Rdata
inst/extdata/analytes_overlap_matrix.RData
inst/extdata/gene.metab.IntLIM.res.RData
inst/extdata/gene.metab.T.test.res.RData
inst/extdata/genes_overlap_matrix.RData
inst/extdata/metabolites_overlap_matrix.RData
inst/tools/db.properties.template
install.R
man/FilterFishersResults.Rd
man/bhCorrect.Rd
man/buildFrequencyTables.Rd
man/checkIdPrefixes.Rd
man/chemicalClassEnrichment.Rd
man/chemicalClassSurvey.Rd
man/chemicalClassSurveyRampIdsConn.Rd
man/chemicalClassSurveyRampIdsFullPopConn.Rd
man/cleanup.Rd
man/compute_overlap_matrix.Rd
man/connectToRaMP.Rd
man/findAnalyteHasPathway.Rd
man/findCluster.Rd
man/findDuplicatePathways.Rd
man/find_duplicate_pathways.Rd
man/getAnalyteFromPathway.Rd
man/getChemicalProperties.Rd
man/getCurrentRaMPSourceDBVersions.Rd
man/getCurrentRaMPVersion.Rd
man/getCustomPathwayFromAnalyte.Rd
man/getEntityCountsFromSourceDBs.Rd
man/getMetaFromOnto.Rd
man/getMetabChemClass.Rd
man/getMetabClassDataSources.Rd
man/getMetabClassTypes.Rd
man/getOntoFromMeta.Rd
man/getOntologies.Rd
man/getPathwayFromAnalyte.Rd
man/getPathwayNameList.Rd
man/getPrefixesFromAnalytes.Rd
man/getRaMPAnalyteIntersections.Rd
man/getRaMPInfoFromAnalytes.Rd
man/getRampSourceInfoFromAnalyteIDs.Rd
man/getReactionsForAnalytes.Rd
man/getReactionsForRaMPCompoundIds.Rd
man/getReactionsForRaMPGeneIds.Rd
man/getTotalFoundInCategories.Rd
man/listToQueryString.Rd
man/pathwayResultsPlot.Rd
man/plotCataNetwork.Rd
man/processData.Rd
man/queryReport.Rd
man/rampFastCata.Rd
man/rampFastCataOriginal.Rd
man/rampFastPathFromSource.Rd
man/rampFindClassInfoFromSourceId.Rd
man/rampFindSourceFromId.Rd
man/rampFindSourceRampId.Rd
man/rampFindSynonymFromSynonym.Rd
man/runCombinedFisherTest.Rd
man/runFisherTest.Rd
man/segregateDataBySource.Rd
man/setConnectionToRaMP.Rd
man/updateOverlapMatrices.Rd
man/updateOverlapMatrix.Rd
man/writePathwaysToCSV.Rd
man/write_FishersResults.Rd
runtime.txt
tests/testthat.R
tests/testthat/test-FilterFisherResults.R
tests/testthat/test-analytes_to_reactions.R
tests/testthat/test-chemicalClassEnrichment.R
tests/testthat/test-chemicalClassSurvey.R
tests/testthat/test-getAnalyteFromPathway.R
tests/testthat/test-getChemicalProperties.R
tests/testthat/test-getMetaFromOnto.R
tests/testthat/test-getPathwayFromAnalyte.R
tests/testthat/test-report_p.R
tests/testthat/test-runCombinedFisherTest.R
tests/testthat/test-runCombinedFishersTest.R
