Files in ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)

.Rbuildignore
.gitignore
.travis.yml
DESCRIPTION
Dockerfile
Jenkinsfile
NAMESPACE
R/OntologyQueryFunctions.R R/ReturnAnalytes_InputPathways.R R/ReturnGeneMetab_SameRxn.R R/ReturnPathwaysEnrich_InputAnalytes.R R/SourceDataFunctions.R R/connectToRaMP.R R/globals.R R/metClassUtil.R R/plottingFunctions.R R/printingFunctions.R R/processNewRamp.R R/rampChemClassQueries.R R/rampChemPropQueries.R R/rampQueryHelper.R
R/sysdata.rda
R/writingFunctions.R README.md
RaMP.Rproj
inst/extdata/.DS_Store
inst/extdata/FT_data.Rdata
inst/extdata/analytes_overlap_matrix.RData
inst/extdata/gene.metab.IntLIM.res.RData
inst/extdata/gene.metab.T.test.res.RData
inst/extdata/genes_overlap_matrix.RData
inst/extdata/metabolites_overlap_matrix.RData
inst/tools/db.properties.template
install.R man/FilterFishersResults.Rd man/bhCorrect.Rd man/buildFrequencyTables.Rd man/checkIdPrefixes.Rd man/chemicalClassEnrichment.Rd man/chemicalClassSurvey.Rd man/chemicalClassSurveyRampIdsConn.Rd man/chemicalClassSurveyRampIdsFullPopConn.Rd man/cleanup.Rd man/compute_overlap_matrix.Rd man/connectToRaMP.Rd man/findAnalyteHasPathway.Rd man/findCluster.Rd man/find_duplicate_pathways.Rd man/getAnalyteFromPathway.Rd man/getChemicalProperties.Rd man/getCurrentRaMPSourceDBVersions.Rd man/getCurrentRaMPVersion.Rd man/getEntityCountsFromSourceDBs.Rd man/getMetaFromOnto.Rd man/getMetabChemClass.Rd man/getMetabClassDataSources.Rd man/getMetabClassTypes.Rd man/getOntoFromMeta.Rd man/getOntologies.Rd man/getPathwayFromAnalyte.Rd man/getPathwayNameList.Rd man/getPrefixesFromAnalytes.Rd man/getRaMPAnalyteIntersections.Rd man/getRaMPInfoFromAnalytes.Rd man/getTotalFoundInCategories.Rd man/pathwayResultsPlot.Rd man/plotCataNetwork.Rd man/processData.Rd man/queryReport.Rd man/rampFastCata.Rd man/rampFastCataOriginal.Rd man/rampFastPathFromSource.Rd man/rampFindClassInfoFromSourceId.Rd man/rampFindSourceFromId.Rd man/rampFindSourceRampId.Rd man/rampFindSynonymFromSynonym.Rd man/runCombinedFisherTest.Rd man/runFisherTest.Rd man/segregateDataBySource.Rd man/setConnectionToRaMP.Rd man/updateOverlapMatrices.Rd man/updateOverlapMatrix.Rd man/writePathwaysToCSV.Rd man/write_FishersResults.Rd
runtime.txt
tests/testthat.R tests/testthat/test-FilterFisherResults.R tests/testthat/test-chemicalClassEnrichment.R tests/testthat/test-chemicalClassSurvey.R tests/testthat/test-getAnalyteFromPathway.R tests/testthat/test-getChemicalProperties.R tests/testthat/test-getMetaFromOnto.R tests/testthat/test-getPathwayFromAnalyte.R tests/testthat/test-report_p.R tests/testthat/test-runCombinedFisherTest.R tests/testthat/test-runCombinedFishersTest.R
ncats/RaMP-DB documentation built on Sept. 26, 2022, 4:37 a.m.