getReactionClassesForAnalytes: getReactionClassesForAnalytes returns reactions class and EC...

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

getReactionClassesForAnalytes returns reactions class and EC numbers for a collection of input compound ids

Description

getReactionClassesForAnalytes returns reactions class and EC numbers for a collection of input compound ids

Usage

getReactionClassesForAnalytes(
  db = RaMP(),
  analytes,
  multiRxnParticipantCount = 1,
  humanProtein = TRUE,
  concatResults = F,
  includeReactionIDs = F,
  useIdMapping = F
)

Arguments

db	a RaMP database object
analytes	list of analyte ids
multiRxnParticipantCount	minimum number of analytes to report a reaction class, default = 1
humanProtein	require reactions to have a human protein (enzyme or transporter), default True
concatResults	returns all reaction class levels in one dataframe rather than a list of 3 dataframes
includeReactionIDs	adds the list of reaction ids for each reaction class
useIdMapping	allows one to fuzzy match input ids to chebi and uniprot to support reaction queries.

Value

returns a three dataframes of reaction EC classe information, one for each EC level

ncats/RaMP-DB documentation built on April 28, 2024, 3:28 a.m.