getRheaAnalyteReactionAssociations: getAnalyteReactionAssociations returns mets associated with...

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

getAnalyteReactionAssociations returns mets associated with input proteins, and proteins associated with input metabolites Associations are made through shared Rhea reactions

Description

getAnalyteReactionAssociations returns mets associated with input proteins, and proteins associated with input metabolites Associations are made through shared Rhea reactions

Usage

getRheaAnalyteReactionAssociations(
  db = RaMP(),
  analytes,
  includeRheaRxnDetails = F,
  humanProteins = T
)

Arguments

db	a RaMP database object
analytes	list of analyte ids
includeRheaRxnDetails	returns additional columns that inlucdes info in the reaction connecting mets and proteins
humanProteins	require reactions to have a human protein (enzyme or transporter), default True

Value

returns a three dataframes of reaction EC classe information, one for each EC level

ncats/RaMP-DB documentation built on April 28, 2024, 3:28 a.m.