getRheaAnalyteReactionAssociations: getAnalyteReactionAssociations returns mets associated with...

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

getAnalyteReactionAssociations returns mets associated with input proteins, and proteins associated with input metabolites Associations are made through shared Rhea reactions

Description

getAnalyteReactionAssociations returns mets associated with input proteins, and proteins associated with input metabolites Associations are made through shared Rhea reactions

Usage

getRheaAnalyteReactionAssociations(
  analytes,
  includeRheaRxnDetails = F,
  humanProtein = TRUE,
  db = RaMP()
)

Arguments

analytes	list of analyte ids
includeRheaRxnDetails	returns additional columns that includes info in the reaction connecting mets and proteins
humanProtein	require reactions to have a human protein (enzyme or transporter), default True
db	a RaMP database object

Value

returns a three dataframes of reaction EC classe information, one for each EC level

ncats/RaMP-DB documentation built on June 10, 2025, 10:50 a.m.