API for ncats/RaMP-DB
RaMP (Relational Database of Metabolomic Pathways)
| Global functions | |
|---|---|
| .RaMP | Source code |
| .conpass | Source code |
| .dbcon | Source code |
| .dbname | Source code |
| .get_local_db_version_list | Source code |
| .get_ramp_db | Source code |
| .get_remote_db_version_list | Source code |
| .host | Source code |
| .is_sqlite | Source code |
| .is_version_in_remote_lfs | Source code |
| .port | Source code |
| .username | Source code |
| .valid_ramp_database | Source code |
| .version_from_db_file | Source code |
| FilterFishersResults | Man page Source code |
| RaMP | Man page Source code |
| bhCorrect | Man page Source code |
| buildAnalyteOverlapPerRxnLevelUpsetDatafarme | Man page Source code |
| buildFrequencyTables | Man page Source code |
| buildPropertyList | Source code |
| buildReactionClassesSunburstDatafarme | Man page Source code |
| checkIdPrefixes | Man page Source code |
| checkReactionInputIds | Source code |
| chemicalClassEnrichment | Man page Source code |
| chemicalClassSurvey | Man page Source code |
| chemicalClassSurveyRampIdsConn | Man page Source code |
| chemicalClassSurveyRampIdsFullPopConn | Man page Source code |
| cleanup | Man page Source code |
| combineStringLists | Man page Source code |
| compute_overlap_matrix | Man page Source code |
| compute_overlap_matrix2 | Source code |
| filterPathwaysByAnalyteCount | Man page Source code |
| findAnalyteHasPathway | Man page Source code |
| findCluster | Man page Source code |
| findDuplicatePathways | Man page Source code |
| find_duplicate_pathways | Man page Source code |
| getAnalyteFromPathway | Man page Source code |
| getChemicalProperties | Man page Source code |
| getCurrentRaMPSourceDBVersions | Man page Source code |
| getCurrentRaMPVersion | Man page Source code |
| getCustomPathwayFromAnalyte | Man page Source code |
| getEntityCountsFromSourceDBs | Man page Source code |
| getMetaFromOnto | Man page Source code |
| getMetabChemClass | Man page Source code |
| getMetabClassDataSources | Man page Source code |
| getMetabClassTypes | Man page Source code |
| getOntoFromMeta | Man page Source code |
| getOntologies | Man page Source code |
| getPathwayFromAnalyte | Man page Source code |
| getPathwayNameList | Man page Source code |
| getPrefixesFromAnalytes | Man page Source code |
| getRaMPAnalyteIntersections | Man page Source code |
| getRaMPInfoFromAnalytes | Man page Source code |
| getRampSourceInfoFromAnalyteIDs | Man page Source code |
| getReactionClassStats | Man page Source code |
| getReactionClassStatsOnAnalytes | Man page Source code |
| getReactionClassesForAnalytes | Man page Source code |
| getReactionDetails | Man page Source code |
| getReactionParticipants | Man page Source code |
| getReactionParticpantCounts | Man page Source code |
| getReactionRheaURLs | Man page Source code |
| getReactionSourceIdsFromReactionQuery | Man page Source code |
| getReactionsForAnalytes | Man page Source code |
| getReactionsForRaMPCompoundIds | Man page Source code |
| getReactionsForRaMPGeneIds | Man page Source code |
| getReactionsForSourceCompoundIds | Man page Source code |
| getReactionsForSourceProteinIds | Man page Source code |
| getRheaAnalyteReactionAssociations | Man page Source code |
| getRheaEnzymesAndTransportersForMetabolites | Man page Source code |
| getRheaMetabolitesForProteins | Man page Source code |
| getTotalFoundInCategories | Man page Source code |
| listAvailableRaMPDbVersions | Man page Source code |
| listRaMPVersions | Man page Source code |
| listToQueryString | Man page Source code |
| pathwayResultsPlot | Man page Source code |
| plotAnalyteOverlapPerRxnLevel | Man page Source code |
| plotCataNetwork | Man page Source code |
| plotReactionClasses | Man page Source code |
| processData | Man page Source code |
| queryReport | Man page Source code |
| rampFastCata | Man page Source code |
| rampFastCataOriginal | Man page Source code |
| rampFastPathFromSource | Man page Source code |
| rampFindClassInfoFromSourceId | Man page Source code |
| rampFindSourceFromId | Man page Source code |
| rampFindSourceRampId | Man page Source code |
| rampFindSynonymFromSynonym | Man page Source code |
| removeLocalRampDB | Man page Source code |
| runCombinedFisherTest | Man page Source code |
| runFisherTest | Man page Source code |
| runQuery | Man page Source code |
| segregateDataBySource | Man page Source code |
| setupRdataCache | Source code |
| show | Man page |
| show,RaMP-method | Man page |
| updateOverlapMatrices | Man page Source code |
| updateOverlapMatrix | Man page Source code |
| writePathwaysToCSV | Man page Source code |
| write_FishersResults | Man page Source code |
