getReactionsForAnalytes: getReactionsForAnalytes

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

getReactionsForAnalytes

Description

getReactionsForAnalytes

Usage

getReactionsForAnalytes(
  db = RaMP(),
  analytes,
  onlyHumanMets = F,
  humanProtein = T,
  includeTransportRxns = F,
  rxnDirs = c("UN"),
  includeRxnURLs = F
)

Arguments

db	a RaMP databse object
analytes	list of analytes
onlyHumanMets	boolean to only return pathways containing only human metabolites (ChEBI ontology) (dev in progress)
humanProtein	boolean to only control pathways catalyzed by a human proteins (having human Uniprot) (dev in progress)
includeTransportRxns	if TRUE, returns metabolic and transport reactions
rxnDirs	character vector of length > 1, specifying reaction directions to return c("UN", "LR", "RL", "BD", "ALL"), default = c("UN").
includeRxnURLs	if TRUE, urls to Rhea.org will be delivered in the result dataframe for each reaction

Value

a list of reaction information on each input analyte, separate data.frame for metabolites, genes, and common reactions

ncats/RaMP-DB documentation built on June 1, 2024, 9:34 p.m.