getReactionsForAnalytes: getReactionsForAnalytes

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

getReactionsForAnalytes

Description

getReactionsForAnalytes

Usage

getReactionsForAnalytes(
  analytes,
  analyteType = "metabolites",
  namesOrIds = "ids",
  onlyHumanMets = F,
  humanProtein = F,
  includeTransportRxns = F,
  rxnDirs = c("UN")
)

Arguments

analytes	list of analytes
analyteType	analyte type, 'metabolites' (default), 'genes' or 'both'
namesOrIds	indicates if input analyte list contains identifiers or analyte names
onlyHumanMets	boolean to only return pathways containing only human metabolites (ChEBI ontology) (dev in progress)
humanProtein	boolean to only control pathways catalyzed by a human proteins (having human Uniprot) (dev in progress)
includeTransportRxns	if TRUE, returns metabolic and transport reactions
rxnDirs	character vector of length > 1, specifying reaction directions to return c("UN", "LR", "RL", "BD", "ALL"), default = c("UN").

Value

a list of reaction information on each input analyte, separate data.frame for metabolites, genes, and common reactions

ncats/RaMP-DB documentation built on Oct. 28, 2023, 8:12 a.m.