plotCataNetwork: Plots a network based on gene-metabolite relationships
In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

plotCataNetwork

R Documentation

Plots a network based on gene-metabolite relationships

Description

Plots a network based on gene-metabolite relationships

Usage

plotCataNetwork(catalyzedf = "")

Arguments

catalyzedf

a data.frame output by rampFastCata() that contains analytes that are in the same reaction

Value

An interactive HTML plot that allows the user to pan/zoom into regions of interest. User genes/metabolites are highlighted in blue, whereas analytes found by the function are orange.

Examples

## Not run: 
pkg.globals <- setConnectionToRaMP(dbname="ramp2",username="root",conpass="",host = "localhost")
catalyzedf <- rampFastCata(analytes="creatine",NamesOrIds="names")
plotCataNetwork(catalyzedf)

## End(Not run)

ncats/RaMP-DB documentation built on Oct. 28, 2023, 8:12 a.m.