plotCataNetwork: Plots a network based on gene-metabolite relationships

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

Plots a network based on gene-metabolite relationships

Description

Plots a network based on gene-metabolite relationships

Usage

plotCataNetwork(catalyzeDf = "", ...)

Arguments

catalyzeDf	a data.frame output by rampFastCata() that contains analytes that are in the same reaction
...	Internal Use - for handling deprecated parameter names

Value

An interactive HTML plot that allows the user to pan/zoom into regions of interest. User genes/ metabolites are highlighted in blue, whereas analytes found by the function are orange.

Examples

## Not run: 
inputs.of.interest <- c("kegg:C00186" , "hmdb:HMDB0000148", "kegg:C00780", "hmdb:HMDB0000064",
      "ensembl:ENSG00000115850", "uniprot:Q99259")

new.transcripts <- rampFastCata(analytes = inputs.of.interest, db = rampDB)

plotCataNetwork(head(new.transcripts, n=100))

## End(Not run)

ncats/RaMP-DB documentation built on June 10, 2025, 10:50 a.m.