plotOntologyEnrichmentResults: Cluster and plot significant ontologies by FDR-adjusted pVal

In ncats/RaMP-DB: RaMP (Relational Database of Metabolomic Pathways)

Cluster and plot significant ontologies by FDR-adjusted pVal

Description

Cluster and plot significant ontologies by FDR-adjusted pVal

Usage

plotOntologyEnrichmentResults(
  ontologiesSig,
  pVal = "FDR",
  textSize = 8,
  sigCutoff = 0.05,
  interactive = FALSE,
  db = RaMP()
)

Arguments

ontologiesSig	output of FilterFishersResults
pVal	Which p value to plot, choose from Raw, FDR or Holm-adjusted
textSize	Scales all text in figure (Default=16)
sigCutoff	Aesthetic, shows pvalue cutoff for significant ontologies
interactive	If TRUE, return interactive plotly object instead of ggplot object
db	a RaMP database object

ncats/RaMP-DB documentation built on June 10, 2025, 10:50 a.m.