API for pmartR/pmartRseq
Analysis and Visualization of 16S Data
| Global functions | |
|---|---|
| CLR_Norm | Man page |
| CSS_Norm | Man page |
| Log_Norm | Man page |
| Quant_Norm | Man page |
| Rarefy | Man page |
| TMM_Norm | Man page |
| TSS_Norm | Man page |
| abundance_calc | Man page |
| alphaDiv_calc | Man page |
| applyFilt | Man page Man page Man page Man page |
| applyFilt.countFilter | Man page |
| applyFilt.metaFilter | Man page |
| applyFilt.sampleFilter | Man page |
| applyFilt_worker | Man page |
| as.seqData | Man page |
| countSTAT | Man page |
| count_based_filter | Man page |
| detect_modules | Man page |
| effsp_calc | Man page |
| evenness_calc | Man page |
| group_designation | Man page |
| import_seqData | Man page |
| indsp_calc | Man page |
| jaccard_calc | Man page |
| med_scounts_norm | Man page |
| metadata_based_filter | Man page |
| mod_env | Man page |
| network_calc | Man page |
| network_indices | Man page |
| network_plot | Man page |
| normalize_data | Man page |
| plot.abunRes | Man page |
| plot.alphaRes | Man page |
| plot.countFilter | Man page |
| plot.countSTAT_results | Man page |
| plot.effspRes | Man page |
| plot.evenRes | Man page |
| plot.indspRes | Man page |
| plot.jaccardRes | Man page |
| plot.modEnv | Man page |
| plot.paRes | Man page |
| plot.richRes | Man page |
| plot.sampleFilter | Man page |
| plot.seqData | Man page |
| plot_all_diffabun | Man page |
| plot_indsp | Man page |
| plot_pmartRseq | Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page |
| pmartRseq | Man page |
| pmartRseq-package | Man page |
| pmartRseq_DESeq2 | Man page |
| pmartRseq_NMDS | Man page |
| pmartRseq_aldex2 | Man page |
| pmartRseq_edgeR | Man page |
| pmartRseq_igraph | Man page |
| pmartRseq_to_vegan | Man page |
| poisson_norm | Man page |
| report | Man page |
| richness_calc | Man page |
| sample_based_filter | Man page |
| split_emeta | Man page |
| summary-pmartRseq | Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page |
| summary.abunRes | Man page |
| summary.alphaRes | Man page |
| summary.countFilter | Man page |
| summary.countSTAT_results | Man page |
| summary.effspRes | Man page |
| summary.evenRes | Man page |
| summary.indspRes | Man page |
| summary.jaccardRes | Man page |
| summary.paRes | Man page |
| summary.richRes | Man page |
| summary.seqData | Man page |
| taxa_rollup | Man page |
