pmartRseq_to_vegan: Transforms an omicsData object into a vegan data object
In pmartR/pmartRseq: Analysis and Visualization of 16S Data

Description Usage Arguments Value Author(s) References Examples

This function takes an omicsData object and transforms it into a data object suitable for use in the vegan package

1	pmartRseq_to_vegan(omicsData)

omicsData

an object of the class 'seqData' created by as.seqData

A data object for use with the package 'vegan'

Allison Thompson

Jari Oksanen, F. Guillaume Blanchet, Michael Friendly, Roeland Kindt, Pierre Legendre, Dan McGlinn, Peter R. Minchin, R. B. O'Hara, Gavin L. Simpson, Peter Solymos, M. Henry H. Stevens, Eduard Szoecs and Helene Wagner (2016). vegan: Community Ecology Package. R package version 2.4-1. https://CRAN.R-project.org/package=vegan

## Not run: 

library(vegan)
library(mintJansson)
data(rRNA_data)

data <- pmartRseq_to_vegan(rRNA_data)
ord <- metaMDS(data)
plot(ord, display="sites", type="points")

## End(Not run)