jaccard_calc: Calculates Jaccard Index
In pmartR/pmartRseq: Analysis and Visualization of 16S Data

Description Usage Arguments Details Value Author(s) Examples

This function calculates Jaccard's dis/similarity coefficient between group replicates.

1	jaccard_calc(omicsData, sim = TRUE)

`omicsData`	an object of the class 'seqData' created by `as.seqData`
`sim`	TRUE/FALSE indicating if you want a value for Jaccard similarity (TRUE) or dissimilarity (FALSE). Default is TRUE.

Jaccard dis/similarity index is calculated across replicates within groups. The index is then averaged for each replicate.

An object of class jaccardRes (also a data.frame) containing the Jaccard dis/similarity value for every sample in the data object.

Allison Thompson

## Not run: 
library(mintJansson)
data(rRNA_data)
rRNA_jaccard <- jaccard_calc(omicsData = rRNA_data, sim = TRUE)
rRNA_jaccard
summary(rRNA_jaccard)
plot(rRNA_jaccard)

## End(Not run)