sample_based_filter: Sample filter object
In pmartR/pmartRseq: Analysis and Visualization of 16S Data
Description
Usage
Arguments
Value
Author(s)
Description
This function returns a sampleFilter object, performing all of the
calculations needed to filter the data based off a specified function and
limit
Usage
1
sample_based_filter(omicsData, fn = "sum")
Arguments
omicsData
An object of the classes "seqData"
fn
Specify "sum" to use the total OTU count of each sample and "criteria"
to use sample names
Value
An object of class sampleFilter (also a data.frame) that contains the
sample identifier and the sum count across all OTUs.
Author(s)
Allison Thompson and Sarah Reehl
pmartR/pmartRseq documentation built on May 25, 2019, 9:20 a.m.
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Description Usage Arguments Value Author(s)
Description
This function returns a sampleFilter object, performing all of the calculations needed to filter the data based off a specified function and limit
Usage
1 | sample_based_filter(omicsData, fn = "sum")
|
Arguments
omicsData |
An object of the classes "seqData" |
fn |
Specify "sum" to use the total OTU count of each sample and "criteria" to use sample names |
Value
An object of class sampleFilter (also a data.frame) that contains the sample identifier and the sum count across all OTUs.
Author(s)
Allison Thompson and Sarah Reehl
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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