evenness_calc: Calculates Evenness Indices
In pmartR/pmartRseq: Analysis and Visualization of 16S Data

Description Usage Arguments Details Value Author(s) Examples

This function calculates Shannon's, Simpson's, and/or Inverse Simpson's evenness indices.

1	evenness_calc(omicsData, index = c("shannon", "simpson"))

`omicsData`	an object of the class 'seqData' reated by `as.seqData`.
`index`	a character vector stating which of the calculations to perform - "shannon" for Shannon's evenness index and/or "simpson" for Simpson's evenness index. Default is to perform both calculations.

Evenness is calculated for each sample in the data. Evenness is calculated using Shannon's evenness index or Simpson's evenness index.

An object of class evenRes (also a data.frame) containing the evenness value(s) for every sample in the data object.

Allison Thompson

## Not run: 
library(mintJansson)
data(rRNA_data)
rRNA_even <- evenness_calc(omicsData = rRNA_data)
rRNA_even
summary(rRNA_even)
plot(rRNA_even)

## End(Not run)