pmartRseq_igraph: Calculates a network graph
In pmartR/pmartRseq: Analysis and Visualization of 16S Data

Description Usage Arguments Details Value Author(s) Examples

This function calculates a network graph, using igraph, in order to create a network plot and/or calcuate network indices.

1	pmartRseq_igraph(netData, coeff = NULL, pval = NULL, qval = NULL)

`netData`	an object of class 'netData', created by `link{network_calc}`
`coeff`	Optional, cutoff value to use for the correlation coefficient
`pval`	Optional, cutoff value to use for p-values
`qval`	Optional, cutoff value to use for q-values

Create an igraph object, which can then be used to visualize a network plot and/or calculate network indices.

An object of class networkGraph (also a data.frame or list) containing the network.

Allison Thompson

## Not run: 
library(mintJansson)
data(rRNA_data)
mynetwork <- network_calc(omicsData = rRNA_data)
myNetGraph <- pmartRseq_igraph(mynetwork)

## End(Not run)