API for pmartR/pmartRseq
Analysis and Visualization of 16S Data

Global functions
CLR_Norm Man page Source code
CSS_Norm Man page Source code
Log_Norm Man page Source code
Quant_Norm Man page Source code
Rarefy Man page Source code
TMM_Norm Man page Source code
TSS_Norm Man page Source code
abundance_calc Man page Source code
alphaDiv_calc Man page Source code
applyFilt Man page Man page Man page Man page Source code
applyFilt.countFilter Man page Source code
applyFilt.metaFilter Man page Source code
applyFilt.sampleFilter Man page Source code
applyFilt_worker Man page Source code
as.seqData Man page Source code Source code
countSTAT Man page Source code
count_based_filter Man page Source code
detect_modules Man page Source code
effsp_calc Man page Source code
evenness_calc Man page Source code
flattenCorrMatrix Source code
group_designation Man page Source code
import_seqData Man page Source code
indsp_calc Man page Source code
iwanthue Source code
jaccard_calc Man page Source code
med_scounts_norm Man page Source code
metadata_based_filter Man page Source code
mod_env Man page Source code
network_calc Man page Source code
network_indices Man page Source code
network_plot Man page Source code
normalize_data Man page Source code
plot.abunRes Man page Source code Source code
plot.alphaRes Man page Source code Source code
plot.countFilter Man page Source code Source code
plot.countSTAT_results Man page Source code Source code
plot.effspRes Man page Source code Source code
plot.evenRes Man page Source code Source code
plot.indspRes Man page Source code Source code
plot.jaccardRes Man page Source code Source code
plot.modEnv Man page Source code Source code
plot.paRes Man page Source code Source code
plot.richRes Man page Source code Source code
plot.sampleFilter Man page Source code Source code
plot.seqData Man page Source code Source code
plot_all_diffabun Man page Source code
plot_indsp Man page Source code
plot_pmartRseq Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page
pmartRseq Man page
pmartRseq-package Man page
pmartRseq_DESeq2 Man page Source code
pmartRseq_NMDS Man page Source code
pmartRseq_aldex2 Man page Source code
pmartRseq_edgeR Man page Source code
pmartRseq_igraph Man page Source code
pmartRseq_to_vegan Man page Source code
pois_samp Source code
poisson_norm Man page Source code
report Man page Source code
richness_calc Man page Source code
sample_based_filter Man page Source code
split_emeta Man page Source code
summary-pmartRseq Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page Man page
summary.abunRes Man page Source code
summary.alphaRes Man page Source code
summary.countFilter Man page Source code
summary.countSTAT_results Man page Source code
summary.effspRes Man page Source code
summary.evenRes Man page Source code
summary.indspRes Man page Source code
summary.jaccardRes Man page Source code
summary.paRes Man page Source code
summary.richRes Man page Source code
summary.seqData Man page Source code
taxa_rollup Man page Source code
pmartR/pmartRseq documentation built on Feb. 15, 2018, 11:03 a.m.