abundance_calc: Calculates Abundance
In pmartR/pmartRseq: Analysis and Visualization of 16S Data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
This function calculates the total number of features seen in each sample.
Usage
1
abundance_calc(omicsData)
Arguments
omicsData
an object of the class 'seqData' usually created by as.seqData.
Details
Abundance is the total number of features (individuals) seen in each sample.
Value
An object of class abunRes (also a data.frame) containing the abundance value for every sample in the data object.
Author(s)
Allison Thompson
Examples
1
2
3
4
5
6
7
8
9
## Not run:
library(mintJansson)
data(rRNA_data)
rRNA_abundance <- abundance_calc(omicsData = rRNA_data)
rRNA_abundance
summary(rRNA_abundance)
plot(rRNA_abundance)
## End(Not run)
pmartR/pmartRseq documentation built on May 25, 2019, 9:20 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) Examples
Description
This function calculates the total number of features seen in each sample.
Usage
1 | abundance_calc(omicsData)
|
Arguments
omicsData |
an object of the class 'seqData' usually created by |
Details
Abundance is the total number of features (individuals) seen in each sample.
Value
An object of class abunRes (also a data.frame) containing the abundance value for every sample in the data object.
Author(s)
Allison Thompson
Examples
1 2 3 4 5 6 7 8 9 | ## Not run:
library(mintJansson)
data(rRNA_data)
rRNA_abundance <- abundance_calc(omicsData = rRNA_data)
rRNA_abundance
summary(rRNA_abundance)
plot(rRNA_abundance)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.