Files in pmartR/pmartRseq
Analysis and Visualization of 16S Data

.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/abundance_calc.R R/alphaDiv_calc.R R/applyFilt.R R/as.seqData.R R/countSTAT.R R/count_based_filter.R R/detect_modules.R R/effsp_calc.R R/evenness_calc.R R/group_designation.R R/import_seqData.R R/indsp_calc.R R/jaccard_calc.R R/metadata_based_filter.R R/mod_env.R R/network_calc.R R/network_indices.R R/network_plot.R R/norm_funcs.R R/normalize_data.R R/plot_all_diffabun.R R/plot_indsp.R R/plot_pmartRseq.R R/pmartRseq.R R/pmartRseq_DESeq2.R R/pmartRseq_NMDS.R R/pmartRseq_aldex2.R R/pmartRseq_edgeR.R R/pmartRseq_igraph.R R/pmartRseq_to_vegan.R R/report.R R/richness_calc.R R/sample_based_filter.R R/seqData_Report.Rmd R/split_emeta.R R/summary_pmartRseq.R R/taxa_rollup.R README.md man/CLR_Norm.Rd man/CSS_Norm.Rd man/Log_Norm.Rd man/Quant_Norm.Rd man/Rarefy.Rd man/TMM_Norm.Rd man/TSS_Norm.Rd man/abundance_calc.Rd man/alphaDiv_calc.Rd man/applyFilt.Rd man/applyFilt_worker.Rd man/as.seqData.Rd man/countSTAT.Rd man/count_based_filter.Rd man/detect_modules.Rd man/effsp_calc.Rd man/evenness_calc.Rd man/group_designation.Rd man/import_seqData.Rd man/indsp_calc.Rd man/jaccard_calc.Rd man/med_scounts_norm.Rd man/metadata_based_filter.Rd man/mod_env.Rd man/network_calc.Rd man/network_indices.Rd man/network_plot.Rd man/normalize_data.Rd man/plot_all_diffabun.Rd man/plot_indsp.Rd man/plot_pmartRseq.Rd man/pmartRseq.Rd man/pmartRseq_DESeq2.Rd man/pmartRseq_NMDS.Rd man/pmartRseq_aldex2.Rd man/pmartRseq_edgeR.Rd man/pmartRseq_igraph.Rd man/pmartRseq_to_vegan.Rd man/poisson_norm.Rd man/report.Rd man/richness_calc.Rd man/sample_based_filter.Rd man/split_emeta.Rd man/summary-pmartRseq.Rd man/taxa_rollup.Rd
pmartRseq.Rproj
tests/test.biom
tests/testthat.R tests/testthat/test-imports.R tests/testthat/test-structure.R
tests/testthat/test_Meta.csv
tests/testthat/test_OTU.csv
tests/testthat/test_Taxa.csv
pmartR/pmartRseq documentation built on Feb. 15, 2018, 11:03 a.m.