Files in pmartR/pmartRseq
Analysis and Visualization of 16S Data
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/abundance_calc.R
R/alphaDiv_calc.R
R/applyFilt.R
R/as.seqData.R
R/countSTAT.R
R/count_based_filter.R
R/detect_modules.R
R/effsp_calc.R
R/evenness_calc.R
R/group_designation.R
R/import_seqData.R
R/indsp_calc.R
R/jaccard_calc.R
R/metadata_based_filter.R
R/mod_env.R
R/network_calc.R
R/network_indices.R
R/network_plot.R
R/norm_funcs.R
R/normalize_data.R
R/plot_all_diffabun.R
R/plot_indsp.R
R/plot_pmartRseq.R
R/pmartRseq.R
R/pmartRseq_DESeq2.R
R/pmartRseq_NMDS.R
R/pmartRseq_aldex2.R
R/pmartRseq_edgeR.R
R/pmartRseq_igraph.R
R/pmartRseq_to_vegan.R
R/report.R
R/richness_calc.R
R/sample_based_filter.R
R/seqData_Report.Rmd
R/split_emeta.R
R/summary_pmartRseq.R
R/taxa_rollup.R
README.md
man/CLR_Norm.Rd
man/CSS_Norm.Rd
man/Log_Norm.Rd
man/Quant_Norm.Rd
man/Rarefy.Rd
man/TMM_Norm.Rd
man/TSS_Norm.Rd
man/abundance_calc.Rd
man/alphaDiv_calc.Rd
man/applyFilt.Rd
man/applyFilt_worker.Rd
man/as.seqData.Rd
man/countSTAT.Rd
man/count_based_filter.Rd
man/detect_modules.Rd
man/effsp_calc.Rd
man/evenness_calc.Rd
man/group_designation.Rd
man/import_seqData.Rd
man/indsp_calc.Rd
man/jaccard_calc.Rd
man/med_scounts_norm.Rd
man/metadata_based_filter.Rd
man/mod_env.Rd
man/network_calc.Rd
man/network_indices.Rd
man/network_plot.Rd
man/normalize_data.Rd
man/plot_all_diffabun.Rd
man/plot_indsp.Rd
man/plot_pmartRseq.Rd
man/pmartRseq.Rd
man/pmartRseq_DESeq2.Rd
man/pmartRseq_NMDS.Rd
man/pmartRseq_aldex2.Rd
man/pmartRseq_edgeR.Rd
man/pmartRseq_igraph.Rd
man/pmartRseq_to_vegan.Rd
man/poisson_norm.Rd
man/report.Rd
man/richness_calc.Rd
man/sample_based_filter.Rd
man/split_emeta.Rd
man/summary-pmartRseq.Rd
man/taxa_rollup.Rd
pmartRseq.Rproj
tests/test.biom
tests/testthat.R
tests/testthat/test-imports.R
tests/testthat/test-structure.R
tests/testthat/test_Meta.csv
tests/testthat/test_OTU.csv
tests/testthat/test_Taxa.csv
