network_indices: Calculate Indices (metrics) for Network
In pmartR/pmartRseq: Analysis and Visualization of 16S Data

Description Usage Arguments Details Value Author(s) References Examples

This function calculates a variety of indices for a network

1	network_indices(netGraph)

netGraph

an object of class 'networkGraph', created by link{pmartRseq_igraph}

A network graph is created for the network(s) that were generated.

A list containing 1) Metrics - metric indices for the graph, and 2) Random - metric indices for a random graph to compare against.

Allison Thompson

Ju et al., 2014. Taxonomic relatedness shapes bacterial assembly in activated sludge of globally distributed wastewater treatment plants. Environ Microbiol. 2014 Aug;16(8):2421-32)

## Not run: 
library(mintJansson)
data(rRNA_data)
mynetwork <- network_calc(omicsData = rRNA_data)
mygraph <- pmartRseq_igraph(netData = mynetwork, coeff=0.6, pval=NULL, qval=0.05)
myindices <- network_indices(netGraph = mygraph)

## End(Not run)