pmartRseq: Analysis and Visualization of 16S Data

Description Usage Arguments Author(s) See Also

Import rRNA (16S/ITS/18S), metatranscript, or metagenomic data from a .biom, .csv, or .txt file. Converts import to a list object to be passed to as.seqData.

1	import_seqData(e_data_filepath, f_data_filepath, e_meta_filepath = NULL)

`e_data_filepath`	character string specifying the file path to a .csv, .txt, or .biom expression data file. The expression data file should contain a feature identifier/name.
`f_data_filepath`	character string specifying the file path to a .csv or .txt sample information file. Each row must correspond to a sample with one column giving the unique sample identifiers found in e_data column names and other columns providing qualitative and/or quantitative traits of each sample. The sample information should also contain a sample identifier column.
`e_meta_filepath`	optional character string specifying the file path of expression meta information. The meta information must contain an identifier column that matches the identifier column in the expression data file.