effsp_calc: Calculates Effective Species
In pmartR/pmartRseq: Analysis and Visualization of 16S Data
Description
Usage
Arguments
Details
Value
Author(s)
Examples
Description
This function calculates the number of effective species for every sample in a count dataset
Usage
1
effsp_calc(omicsData)
Arguments
omicsData
an object of the class 'seqData' reated by as.seqData.
Details
Calculates effective species of count data
Value
An object of class effspRes (also a data.frame) containing the number of effective species for every sample in the data object.
Author(s)
Allison Thompson
Examples
1
2
3
4
5
6
7
8
9
## Not run:
library(mintJansson)
data(rRNA_data)
rRNA_effsp <- effsp_calc(omicsData = rRNA_data)
rRNA_effsp
summary(rRNA_effsp)
plot(rRNA_effsp)
## End(Not run)
pmartR/pmartRseq documentation built on May 25, 2019, 9:20 a.m.
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Description Usage Arguments Details Value Author(s) Examples
Description
This function calculates the number of effective species for every sample in a count dataset
Usage
1 | effsp_calc(omicsData)
|
Arguments
omicsData |
an object of the class 'seqData' reated by |
Details
Calculates effective species of count data
Value
An object of class effspRes (also a data.frame) containing the number of effective species for every sample in the data object.
Author(s)
Allison Thompson
Examples
1 2 3 4 5 6 7 8 9 | ## Not run:
library(mintJansson)
data(rRNA_data)
rRNA_effsp <- effsp_calc(omicsData = rRNA_data)
rRNA_effsp
summary(rRNA_effsp)
plot(rRNA_effsp)
## End(Not run)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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