annotation_plot: Plot brain structure annotation

In quadbiolab/VoxHunt: Projecting single-cell transcriptomes to spatial brain maps

Plot brain structure annotation

Description

Plot brain structure annotation

Usage

annotation_plot(
  annot_df,
  annotation_level = "custom_2",
  annotation_colors = many,
  show_coordinates = FALSE,
  show_legend = FALSE,
  alpha = 0.5
)

Arguments

annotation_level	The structure annotation level to color code.
annotation_colors	A character vector with the color scale.
show_coordinates	Logical. Whether to show slice coordinates or not.
show_legend	Logical. Whether to show a color legend or not.
alpha	Float. The alpha value for grid tiles.

Value

An annotation plot.

quadbiolab/VoxHunt documentation built on March 4, 2024, 6:37 a.m.