Files in quadbiolab/VoxHunt

Projecting single-cell transcriptomes to spatial brain maps

.Rbuildignore

.github/workflows/check-build.yaml

.gitignore

DESCRIPTION

LICENSE

NAMESPACE

R/brainspan_map.R R/colors.R R/deconvolution.R R/differential_expression.R R/generics.R R/mousebrain_map.R R/plots.R R/reference_map.R R/utils.R R/voxel_map.R README.md

data/brainspan.RData

data/example_pseudobulk.RData

data/example_seurat.RData

data/human2mouse.RData

data/voxel_meta.RData

docs/404.html

docs/LICENSE-text.html

docs/LICENSE.html

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docs/articles/deconvolution.html

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docs/articles/getting_started.html

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docs/articles/index.html

docs/articles/install.html

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docs/pkgdown.css

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docs/reference/aggregate_matrix.html

docs/reference/annotation_plot.html

docs/reference/as_matrix.html

docs/reference/assign_cells.html

docs/reference/brainspan_map.html

docs/reference/de.html

docs/reference/deconvolute.html

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docs/reference/mapping_plot.html

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docs/reference/plot_annotation.html

docs/reference/plot_expression.html

docs/reference/plot_expression_3d.html

docs/reference/plot_map.html

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docs/reference/plot_structure_similarity.html

docs/reference/print.html

docs/reference/reference_map.html

docs/reference/run_epic.html

docs/reference/safe_cor.html

docs/reference/slice_plot.html

docs/reference/sparse_cor.html

docs/reference/sparse_covcor.html

docs/reference/stage_name.html

docs/reference/structure_markers.html

docs/reference/summarize_groups.html

docs/reference/summarize_structures.html

docs/reference/three_dim_plot.html

docs/reference/variable_genes.html

docs/reference/voxel_map.html

docs/reference/zscale.html

index.md

inst/CITATION

man/aggregate_matrix.Rd man/annotation_plot.Rd man/as_matrix.Rd man/assign_cells.Rd man/brainspan_map.Rd man/de.Rd man/deconvolute.Rd man/feature_plot.Rd

man/figures/abstract.png

man/figures/logo.png

man/get_aba_ref.Rd man/get_markers.Rd man/load_aba_data.Rd man/load_mousebrain_data.Rd man/log_message.Rd man/mapping_plot.Rd man/mousebrain_map.Rd man/no_legend.Rd man/no_text.Rd man/no_x_text.Rd man/no_y_text.Rd man/plot_annotation.Rd man/plot_expression.Rd man/plot_expression_3d.Rd man/plot_map.Rd man/plot_map_3d.Rd man/plot_structure_similarity.Rd man/print.Rd man/reference_map.Rd man/run_epic.Rd man/safe_cor.Rd man/slice_plot.Rd man/sparse_cor.Rd man/sparse_covcor.Rd man/stage_name.Rd man/structure_markers.Rd man/summarize_groups.Rd man/summarize_structures.Rd man/three_dim_plot.Rd man/variable_genes.Rd man/voxel_map.Rd man/zscale.Rd

pkgdown/_pkgdown.yml

pkgdown/extra.css

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tests/test_manual.R tests/testthat.R tests/testthat/test_deconvolution.R tests/testthat/test_other_ref.R tests/testthat/test_voxhunt.R vignettes/deconvolution.Rmd

vignettes/deconvolution.html

vignettes/getting_started.Rmd

vignettes/getting_started.html

vignettes/install.Rmd vignettes/other_references.Rmd

vignettes/other_references.html

voxhunt.Rproj

quadbiolab/VoxHunt documentation built on March 4, 2024, 6:37 a.m.