plot_structure_similarity | R Documentation |
Plot similarity to brain structures
plot_structure_similarity(object, ...)
## S3 method for class 'VoxelMap'
plot_structure_similarity(
object,
groups = NULL,
annotation_level = "custom_3",
annotation_colors = sym_colors_custom2,
map_colors = blues_flat,
cluster = TRUE,
include_unannotated = FALSE,
scale = T,
...
)
## S3 method for class 'BrainSpanMap'
plot_structure_similarity(
object,
groups = NULL,
annotation_level = c("structure_group", "structure_name", "structure_acronym"),
map_colors = blues_flat,
scale = TRUE
)
## S3 method for class 'MousebrainMap'
plot_structure_similarity(
object,
groups = NULL,
map_colors = blues_flat,
cluster = TRUE,
scale = TRUE,
...
)
groups |
A metadata column or character vector to group the cells, e.g. clusters, cell types. |
annotation_level |
The structure annotation level to color code. |
annotation_colors |
Color map for structure annotation. |
cluster |
Logical. Perform hierarchical clustering on rows and columns. |
A plot showing average correlation to each brain structure.
A similarity map.
A plot showing average correlation to each brain structure.
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