slice_plot: Plot correlation to brain slices and structure annotation

In quadbiolab/VoxHunt: Projecting single-cell transcriptomes to spatial brain maps

Plot correlation to brain slices and structure annotation

Description

Plot correlation to brain slices and structure annotation

Usage

slice_plot(
  slice_df,
  annotation_level = "custom_2",
  annotation_colors = many,
  map_colors = gyrdpu,
  ...
)

Arguments

annotation_level	The structure annotation level to color code.
annotation_colors	Color map for structure annotation.
map_colors	Color map for correlation values.
...	Other arguments passed to patchwork::wrap_plots().

Value

A similarity map with one row per slice and one column per cell group.

quadbiolab/VoxHunt documentation built on March 4, 2024, 6:37 a.m.