plot_expression_3d: Plot gene expression across the mouse brain in 3D

In quadbiolab/VoxHunt: Projecting single-cell transcriptomes to spatial brain maps

Plot gene expression across the mouse brain in 3D

Description

Plot gene expression across the mouse brain in 3D

Usage

plot_expression_3d(
  stage,
  gene,
  annotation_level = NULL,
  annotation_colors = many,
  expression_colors = inferno,
  sizes = c(10, 1000),
  both_hemispheres = TRUE,
  ...
)

Arguments

stage	The developmental stage to plot.
annotation_level	The structure annotation level to color code.
annotation_colors	Color map for structure annotation.
expression_colors	Colors for expression scale.
sizes	The size range for points.
both_hemispheres	Logical. Whether to plot both hemispheres (TRUE) of only one (FALSE).
...	Other arguments passed to plotly::plot_ly().
genes	A character vector with the genes to plot.
view	String indicating the perspective to show. Valid values are 'sagittal', 'coronal', 'traverse', 'z' , 'x', 'y', 'slice', '3D'.

Value

A gene expression plot in 3D.

quadbiolab/VoxHunt documentation built on March 4, 2024, 6:37 a.m.