plot_map_3d: Plot similarity map of single cells to voxels in 3D

In quadbiolab/VoxHunt: Projecting single-cell transcriptomes to spatial brain maps

Plot similarity map of single cells to voxels in 3D

Description

Plot similarity map of single cells to voxels in 3D

Usage

plot_map_3d(object, ...)

## S3 method for class 'VoxelMap'
plot_map_3d(
  object,
  groups = NULL,
  show_group = NULL,
  annotation_level = NULL,
  annotation_colors = NULL,
  map_colors = inferno_flat,
  sizes = c(1, 1000),
  both_hemispheres = TRUE,
  ...
)

Arguments

...	Other arguments passed to plotly::plot_ly().
groups	A metadata column or character vector to group the cells, e.g. clusters, cell types.
annotation_level	The structure annotation level to color code.
annotation_colors	Color map for structure annotation.
map_colors	Color map for correlation values.
sizes	The size range for points.
both_hemispheres	Logical. Whether to plot both hemispheres (TRUE) of only one (FALSE).
group_show	The nameof the group to show in the plot.

Value

A similarity map in 3D.

quadbiolab/VoxHunt documentation built on March 4, 2024, 6:37 a.m.