plot_expression: Plot gene expression across the mouse brain

In quadbiolab/VoxHunt: Projecting single-cell transcriptomes to spatial brain maps

Plot gene expression across the mouse brain

Description

Plot gene expression across the mouse brain

Usage

plot_expression(
  stage,
  genes,
  view = "sagittal",
  slices = NULL,
  annotation_level = "custom_2",
  annotation_colors = NULL,
  expression_colors = gyrdpu,
  ...
)

Arguments

stage	The developmental stage to plot.
genes	A character vector with the genes to plot.
view	String indicating the perspective to show. Valid values are 'sagittal', 'coronal', 'traverse', 'z' , 'x', 'y', 'slice', '3D'.
slices	A numeric vector indicating the slices to plot.
annotation_level	The structure annotation level to color code.
annotation_colors	Color map for structure annotation.
expression_colors	Color map for expression intensity
...	Other arguments passed to patchwork::wrap_plots().

Value

A gene expression plot.

quadbiolab/VoxHunt documentation built on March 4, 2024, 6:37 a.m.