structure_markers: Find differentially expressed features for all structures on...

In quadbiolab/VoxHunt: Projecting single-cell transcriptomes to spatial brain maps

Find differentially expressed features for all structures on a given annotation level

Description

Performs DE analysis between structure annotation levels and returns a tibble.

Usage

structure_markers(
  stage = "E13",
  annotation_level = "custom_3",
  structure_groups = NULL
)

Arguments

stage	The developmental stage from the ABA.
annotation_level	The structure annotation level to perform DE an analysis between.
structure_groups	A character or factor vector to provide custom grouping of voxels.

Value

A tibble with AUROC and p-values.

quadbiolab/VoxHunt documentation built on March 4, 2024, 6:37 a.m.