run_epic: Run EPIC deconvolution
In quadbiolab/VoxHunt: Projecting single-cell transcriptomes to spatial brain maps
View source: R/deconvolution.R
run_epic R Documentation
Run EPIC deconvolution
Description
Run EPIC deconvolution
Usage
run_epic(expr_mat, ref_expr, genes_use, ref_sd = NULL, other_types = FALSE)
Arguments
expr_mat
Input matrix to deconvolute.
ref_expr
Reference expression matrix.
genes_use
Marker genes to use.
ref_sd
Variability of reference expression.
other_types
Whether to infer proportions of type 'other'.
Value
A tibble with deconvoluted proportions for each reference structure.
quadbiolab/VoxHunt documentation built on March 4, 2024, 6:37 a.m.
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View source: R/deconvolution.R
| run_epic | R Documentation |
Run EPIC deconvolution
Description
Run EPIC deconvolution
Usage
run_epic(expr_mat, ref_expr, genes_use, ref_sd = NULL, other_types = FALSE)
Arguments
expr_mat |
Input matrix to deconvolute. |
ref_expr |
Reference expression matrix. |
genes_use |
Marker genes to use. |
ref_sd |
Variability of reference expression. |
other_types |
Whether to infer proportions of type 'other'. |
Value
A tibble with deconvoluted proportions for each reference structure.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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