pkgBuild/R/createSppKey_manual.R
In rBatt/trawlData: Read and Clean Data from Bottom Trawl Surveys
#' Manual entries to species key
#' Manually add or correct species names, taxonomic, ecological, or reference information for spp.key
#'
#' @param spp.key the spp.key data.table contained in this package
createSppKey_manual <- function(spp.key){
# ======================
# = Manual Corrections =
# ======================
check.and.set(wrong="Moira atropus", corrected="Moira atropos")
spp.key[spp=="Moira atropos",
':='(
taxLvl="species",
species="Moira atropos",
genus="Moira",
website="http://www.marinespecies.org/echinoidea/aphia.php?p=taxdetails&id=158067",
flag="manual"
)
]
check.and.set(wrong="Centropristis ocyurus", corrected="Centropristis ocyurus")
spp.key[spp=="Centropristis ocyurus",
':='(
taxLvl="species",
species="Centropristis ocyurus",
genus="Centropristis",
common="Bank sea bass",
Picture="y",
trophicLevel=3.5,
trophicLevel.se=0.53,
website="http://www.fishbase.org/summary/3316",
flag="manual"
)
]
check.and.set(wrong="Mustellus canis", corrected="Mustelus canis")
spp.key[spp=="Mustelus canis",
':='(
taxLvl="species",
common="Dusky smooth-hound",
Picture="y",
trophicLevel=3.6,
# trophicLevel.se=0.2,
website="http://www.fishbase.org/summary/Mustelus-canis.html",
flag="manual"
)
]
check.and.set(wrong="Phenacoscorpius nebris", corrected="Phenacoscorpius nebris")
spp.key[spp=="Phenacoscorpius nebris",
':='(
taxLvl="species",
species="Phenacoscorpius nebris",
genus="Phenacoscorpius",
common="Short-tube scorpionfish",
Picture="y",
trophicLevel=3.5,
trophicLevel.se=0.6,
website="http://www.fishbase.org/summary/12454",
flag="manual"
)
]
check.and.set(wrong="Synagrops bellus", corrected="Synagrops bellus")
spp.key[spp=="Synagrops bellus",
':='(
taxLvl="species",
species="Synagrops bellus",
genus="Synagrops",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=159584",
flag="manual"
)
]
check.and.set(wrong="Synagrops microlepis", corrected="Synagrops microlepis")
spp.key[spp=="Synagrops microlepis",
':='(
taxLvl="species",
species="Synagrops microlepis",
genus="Synagrops",
common="Thinlip splitfin",
Picture="y",
trophicLevel=3.2,
trophicLevel.se=0.37,
website="http://www.fishbase.org/summary/5059",
flag="manual"
)
]
ref2spp(Ref="EZUMIA BAIRDII", Spp="Nezumia bairdii")
spp.key[spp=="Nezumia bairdii",
':='(
spp="Nezumia bairdii",
taxLvl="species",
genus="Nezumia",
species="Nezumia bairdii",
trophicLevel=3.3,
trophicLevel.se=0.1,
Picture="y",
common="Marlin-spike",
website="http://www.fishbase.org/summary/3104",
flag="manual"
)
]
ref2spp(Ref="PORTUNUS FLORIDANUS", Spp="Achelous floridanus")
spp.key[spp=="Achelous floridanus",
':='(
spp="Achelous floridanus",
taxLvl="species",
species="Achelous floridanus",
genus="Achelous",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=557882",
flag="manual"
)
]
ref2spp(Ref="ASTROPECTE COMPTUS", Spp="Astropecten comptus")
spp.key[spp=="Astropecten comptus",
':='(
spp="Astropecten comptus",
taxLvl="species",
genus="Astropecten",
species="Astropecten comptus",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=178649",
flag="manual"
)
]
ref2spp(Ref="BATHYPTEROIS BIGELOWI", Spp="Bathypterois bigelowi")
spp.key[spp=="Bathypterois bigelowi",
':='(
spp="Bathypterois bigelowi",
taxLvl="species",
genus="Bathypterois",
species="Bathypterois bigelowi",
website="http://www.fishbase.org/summary/Bathypterois-bigelowi.html",
Picture="y",
flag="manual"
)
]
ref2spp(Ref="PENNATULA BOREALIS", Spp="Pennatula grandis")
spp.key[spp=="Pennatula grandis",
':='(
spp="Pennatula grandis",
taxLvl="species",
genus="Pennatula",
species="Pennatula grandis",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=128516",
flag="manual"
)
]
check.and.set(wrong="Bollmannia communis", corrected="Bollmannia communis")
spp.key[spp=="Bollmannia communis",
':='(
spp="Bollmannia communis",
taxLvl="species",
genus="Bollmannia",
species="Bollmannia communis",
flag="manual"
)
]
ref2spp(Ref="Brisaster townsendi", Spp="Brisaster townsendi")
spp.key[spp=="Brisaster townsendi",
':='(
spp="Brisaster townsendi",
taxLvl="species",
genus="Brisaster",
species="Brisaster townsendi",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=513144",
flag="manual"
)
]
ref2spp(Ref="Buccinum transliratum", Spp="Buccinum angulosum")
spp.key[spp=="Buccinum angulosum",
':='(
spp="Buccinum angulosum",
common="angular whelk",
family="Buccinidae",
order="Neogastropoda",
class="Gastropoda",
phylum="Mollusca",
kingdom="Animalia",
taxLvl="species",
genus="Buccinum",
species="Buccinum angulosum",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=138858",
flag="manual"
)
]
ref2spp(Ref="CHILOMYCTERUS ATINGA", Spp="Chilomycterus reticulatus")
spp.key[spp=="Chilomycterus reticulatus",
':='(
spp="Chilomycterus reticulatus",
common="spotfin burrfish",
taxLvl="species",
genus="Chilomycterus",
species="Chilomycterus reticulatus",
trophicLevel=3.45, # should just be 3.5?
trophicLevel.se=0.41,
Picture="y",
website="http://www.fishbase.org/summary/Chilomycterus-reticulatus.html",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=403539",
flag="manual"
)
]
ref2spp(Ref="CHLAMYS SETIS", Spp="Caribachlamys sentis")
spp.key[spp=="Caribachlamys sentis",
':='(
spp="Caribachlamys sentis",
taxLvl="species",
genus="Caribachlamys",
species="Caribachlamys sentis",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=393711",
flag="manual"
)
]
ref2spp(Ref="Colus hypolispus", Spp="Latisipho hypolispus")
spp.key[spp=="Latisipho hypolispus",
':='(
spp="Latisipho hypolispus",
taxLvl="species",
genus="Latisipho",
species="Latisipho hypolispus",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=491062",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=254476",
flag="manual"
)
]
ref2spp(Ref="CYCLOTHONE BRAUERI", Spp="Cyclothone braueri")
spp.key[spp=="Cyclothone braueri",
':='(
spp="Cyclothone braueri",
taxLvl="species",
common="Garrick",
genus="Cyclothone",
species="Cyclothone braueri",
family="Gonostomatidae",
order="Stomiiformes",
class="Actinopterygii",
trophicLevel=3.1,
trophicLevel.se=0.18,
Picture="y",
website="http://www.fishbase.de/summary/Cyclothone-braueri.html",
flag="manual"
)
]
ref2spp(Ref="DIAPHUS SPLEDIDUS", Spp="Diaphus splendidus")
spp.key[spp=="Diaphus splendidus",
':='(
spp="Diaphus splendidus",
taxLvl="species",
common="Horned lanternfish",
genus="Diaphus",
species="Diaphus splendidus",
family="Myctophidae",
order="Myctophiformes",
class="Actinopterygii",
trophicLevel=3.0,
trophicLevel.se=0,
Picture="y",
website="http://www.fishbase.org/summary/10174",
flag="manual"
)
]
ref2spp(Ref="DISTORSIO MCGITYI", Spp="Distorsio constricta mcgintyi")
spp.key[spp=="Distorsio constricta mcgintyi",
':='(
spp="Distorsio constricta mcgintyi",
taxLvl="species",
genus="Distorsio",
species="Distorsio constricta",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=422768",
flag="manual"
)
]
ref2spp(Ref="LEPIDOPA BEEDICTI", Spp="Lepidopa benedicti")
spp.key[spp=="Lepidopa benedicti",
':='(
spp="Lepidopa benedicti",
genus="Lepidopa",
species="Lepidopa benedicti",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=421881",
flag="manual"
)
]
spp.key[spp=="Hyporthodus niveatus",subphylum:="Vertebrata"]
setkey(spp.key, spp, ref)
ref2spp(Ref="EPINEPHELUS NIVEATUS", Spp="Hyporthodus niveatus")
spp.key[spp=="Hyporthodus niveatus",
':='(
spp="Hyporthodus niveatus",
genus="Hyporthodus",
species="Hyporthodus niveatus",
common="snowy grouper",
family="Serranidae",
order="Perciformes",
class="Actinopteri",
superclass="Osteichthyes",
subphylum="Vertebrata",
phylum="Chordata",
kingdom="Animalia",
trophicDiet="n",
trophicOrig="y",
taxLvl="species",
trophicLevel=4.04,
trophicLevel.se=0.58,
Picture="y",
flag="manual"
)
]
ref2spp(Ref="EQUETUS ACUMINATUS", Spp="Pareques acuminatus")
spp.key[spp=="Pareques acuminatus",
':='(
spp="Pareques acuminatus",
genus="Pareques",
species="Pareques acuminatus",
taxLvl="species",
common="high-hat",
family="Sciaenidae",
order="Perciformes",
class="Actinopterygii",
superclass="Osteichthyes",
subphylum="Vertebrata",
phylum="Chordata",
kingdom="Animalia",
trophicDiet="y",
trophicOrig="y",
Picture="y",
trophicLevel=3.59,
trophicLevel.se=0.46,
flag="manual"
)
]
ref2spp(Ref="ETMOPTERUS VIRES", spp="Etmopterus virens")
spp.key[spp=="Etmopterus virens",
':='(
spp="Etmopterus virens",
genus="Etmopterus",
species="Etmopterus virens",
common="green lantern shark",
trophicLevel=4.2,
trophicLevel.se=0.73,
Picture="y",
website="http://www.fishbase.org/summary/690",
flag="manual"
)
]
ref2spp(Ref="LUIDIA ELEGAS", Spp="Luidia sarsii elegans")
spp.key[spp=="Luidia sarsii elegans",
':='(
spp="Luidia sarsii elegans",
genus="Luidia",
species="Luidia sarsii",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=752124",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=368112",
flag="manual"
)
]
ref2spp(Ref="HALICHOERES RADIATUS", Spp="Halichoeres radiatus")
spp.key[spp=="Halichoeres radiatus",
':='(
spp="Halichoeres radiatus",
genus="Halichoeres",
species="Halichoeres radiatus",
taxLvl="species",
common="Puddingwife wrasse",
trophicLevel=3.5,
trophicLevel.se=0.1,
Picture="y",
website="http://www.fishbase.org/summary/1068",
flag="manual"
)
]
ref2spp(Ref="Henricia aleutica", Spp="Henricia longispina aleutica")
spp.key[spp=="Henricia longispina aleutica",
':='(
spp="Henricia longispina aleutica",
genus="Henricia",
species="Henricia longispina",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=369124",
flag="manual"
)
]
ref2spp(Ref="ALUTERUS HEUDELOTTI", Spp="Aluterus heudelotii")
ref2spp(Ref="ALUTERUS HEUDELOTI", Spp="Aluterus heudelotii")
spp.key[spp=="Aluterus heudelotii",
':='(
common="Dotterel filefish",
taxLvl="species",
genus="Aluterus",
species="Aluterus heudelotii",
family="Monacanthidae",
order="Tetraodontiformes",
class="Actinopteri",
superclass="Actinopterygii",
subphylum="Craniata",
phylum="Chordata",
kingdom="Metazoa",
Picture="y",
trophicLevel=2.0,
trophicLevel.se=0,
website="http://www.fishbase.org/summary/4273",
flag="manual"
)
]
ref2spp(Ref="ALPHEUS ARMATUS", Spp="Alpheus armatus")
spp.key[spp=="Alpheus armatus",
':='(
spp="Alpheus armatus",
taxLvl="species",
genus="Alpheus",
species="Alpheus armatus",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=421729",
flag="manual"
)
]
ref2spp(Ref="COOKEOLUS JAPONICUS", Spp="Cookeolus japonicus")
spp.key[spp=="Cookeolus japonicus",
':='(
species="Cookeolus japonicus",
genus="Cookeolus",
taxLvl="species",
common="Longfinned bullseye",
Picture="y",
trophicLevel=3.5,
trophicLevel.se=0.6,
website="http://www.fishbase.org/summary/3517",
flag="manual"
)
]
ref2spp(Ref="APRISTURUS IDICUS", Spp="Apristurus indicus")
spp.key[spp=="Apristurus indicus",
':='(
spp="Apristurus indicus",
species="Apristurus indicus",
genus="Apristurus",
taxLvl="species",
common="Smallbelly catshark",
trophicLevel=3.7,
trophicLevel.se=0.3,
Picture="y",
website="http://www.fishbase.org/Summary/speciesSummary.php?ID=766&AT=Kleinbuikkathaai",
flag="manual"
)
]
ref2spp(Ref="Arctomelon sp. cf. stearnsii (Clark & McLean)", Spp="Arctomelon stearnsii")
spp.key[ref=="Arctomelon sp. cf. stearnsii (Clark & McLean)",
':='(
spp="Arctomelon stearnsii",
species="Arctomelon stearnsii",
genus="Arctomelon",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=384681",
flag="manual"
)
]
ref2spp(Ref="ASTARTE GLOBULA", Spp="Astarte globula")
spp.key[ref=="ASTARTE GLOBULA",
':='(
spp="Astarte globula",
species="Astarte globula",
genus="Astarte",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=420839",
flag="manual"
)
]
ref2spp(Ref="BUSYCO CARICA", Spp="Busycon carica")
spp.key[spp=="Busycon carica",
':='(
spp="Busycon carica",
genus="Busycon",
species="Busycon carica",
taxLvl="species",
Picture="y",
common="Knobbed whelk",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=160185",
website2="http://www.sealifebase.org/summary/Busycon-carica.html",
flag="manual"
)
]
ref2spp(Ref="CALAMUS PENNA", Spp="Cabdio penna")
ref2spp(Ref="CALAMUS PEA", Spp="Cabdio penna")
spp.key[spp=="Cabdio penna",
':='(
spp="Cabdio penna",
genus="Cabdio",
species="Cabdio penna",
taxLvl="species",
common="Sheepshead porgy",
Picture="y",
trophicLevel=4.4,
trophicLevel.se=0.2,
website="http://www.fishbase.org/summary/1227",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=159245",
flag="manual"
)
]
ref2spp(Ref="CALLIECTES DAAE", Spp="Callinectes danae")
spp.key[spp=="Callinectes danae",
':='(
spp="Callinectes danae",
genus="Callinectes",
species="Callinectes danae",
taxLvl="species",
common="Dana swimming crab",
trophicLevel=3.63,
trophicLevel.se=0.43,
Picture="y",
website="http://www.sealifebase.org/summary/Callinectes-danae.html",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=107378"
)
]
ref2spp(Ref="Buccinum triplostephanum", Spp="Volutopsion castaneum")
spp.key[spp=="Volutopsion castaneum",
':='(
species="Volutopsion castaneum",
genus="Volutopsion",
taxLvl="species",
common="chestnut whelk",
website="http://arctos.database.museum/name/Buccinum%20castaneum%20triplostephanum",
website2="http://www.sealifebase.org/summary/Volutopsion-castaneum.html",
flag="manual"
)
]
ref2spp(Ref="BUSYCO CAALICULATUM", Spp="Busycotypus canaliculatus")
spp.key[spp=="Busycotypus canaliculatus",
':='(
spp="Busycotypus canaliculatus",
species="Busycotypus canaliculatus",
genus="Busycotypus",
taxLvl="species",
common="Channeled whelk",
Picture="y",
trophicLevel=3.23,
trophicLevel.se=0.17,
website="http://arctos.database.museum/name/Busycon%20canaliculatum",
website2="http://www.sealifebase.org/summary/Busycotypus-canaliculatus.html",
flag="manual"
)
]
ref2spp(Ref="BUSYCO SIISTRUM", Spp="Sinistrofulgur sinistrum")
spp.key[spp=="Sinistrofulgur sinistrum",
':='(
spp="Sinistrofulgur sinistrum",
species="Sinistrofulgur sinistrum",
genus="Sinistrofulgur",
taxLvl="species",
common="Lightning whelk",
Picture="y",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=160189",
website2="http://sealifebase.org/summary/Busycon-sinistrum.html",
flag="manual"
)
]
ref2spp(Ref="CALAPPA AGUSTA", Spp="Hepatus pudibundus")
spp.key[spp=="Hepatus pudibundus", # the correct species name should already be in spp.key
':='(
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=452047",
website2="http://www.sealifebase.org/summary/Hepatus-pudibundus.html"
)
]
ref2spp(Ref="GOOSTOMA ATLATICUM", Spp="Gonostoma atlanticum")
spp.key[spp=="Gonostoma atlanticum",
':='(
spp="Gonostoma atlanticum",
species="Gonostoma atlanticum",
genus="Gonostoma",
common="Atlantic fangjaw",
taxLvl="species",
trophicLevel=3.0,
trophicLevel.se=0.13,
Picture="y",
website="http://www.fishbase.org/summary/5052",
flag="manual"
)
]
ref2spp(Ref="Careproctus sp. cf. rastrinus (Orr et al.)", Spp="Careproctus rastrinus")
spp.key[spp=="Careproctus rastrinus",
':='(
Picture="y",
website="http://www.fishbase.org/summary/Careproctus-rastrinus.html",
flag="manual"
)
]
ref2spp(Ref="Careproctus sp. cf. gilberti (Orr)", Spp="Careproctus gilberti")
spp.key[spp=="Careproctus gilberti",
':='(
trophicLevel=3.2,
trophicLevel.se=0.5,
Picture="y",
website="http://www.fishbase.org/summary/25161",
flag="manual"
)
]
ref2spp(Ref="Careproctus lycopersicus", Spp="Careproctus lycopersicus")
spp.key[spp=="Careproctus lycopersicus",
':='(
spp="Careproctus lycopersicus",
species="Careproctus lycopersicus",
genus="Careproctus",
common="tomato snailfish",
taxLvl="species",
trophicLevel=3.2,
trophicLevel.se=0.5,
website="http://www.fishbase.org/summary/67403",
flag="manual"
)
]
ref2spp(Ref="COUS DAUCUS", Spp="Conus daucus")
spp.key[spp=="Conus daucus",
':='(
spp="Conus daucus",
species="Conus daucus",
genus="Conus",
taxLvl="species",
common="carrot cone",
Picture="y",
website="http://www.sealifebase.org/summary/Conus-daucus.html",
flag="manual"
)
]
ref2spp(Ref="ICTALURUS FURCATUS", Spp="Ictalurus furcatus")
spp.key[spp=="Ictalurus furcatus", # freshwater/ brackish species!!
':='(
spp="Ictalurus furcatus",
species="Ictalurus furcatus",
genus="Ictalurus",
taxLvl="species",
common="blue catfish",
trophicLevel=3.4,
trophicLevel.se=0.44,
Picture="y",
website="http://www.fishbase.org/summary/3019",
flag="manual"
)
]
ref2spp(Ref="CYPSELURUS MELANURUS", Spp="Cheilopogon melanurus")
spp.key[spp=="Cheilopogon melanurus",
':='(
spp="Cheilopogon melanurus",
species="Cheilopogon melanurus",
genus="Cheilopogon",
taxLvl="species",
Picture="y",
trophicLevel=3.6,
trophicLevel.se=0.5,
website="http://www.fishbase.org/summary/cheilopogon-melanurus.html",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=312468",
flag="manual"
)
]
ref2spp(Ref="Chrysaora fuscens", Spp="Chrysaora fuscescens")
spp.key[spp=="Chrysaora fuscescens",
':='(
spp="Chrysaora fuscescens",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=287206",
flag="manual"
)
]
ref2spp(Ref="LIMA SCABRA", Spp="Ctenoides scaber")
spp.key[spp=="Ctenoides scaber",
':='(
spp="Ctenoides scaber",
genus="Ctenoides",
species="Ctenoides scaber",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=420747",
website2="http://www.sealifebase.org/summary/Ctenoides-scaber.html",
Picture="y",
flag="manual"
)
]
ref2spp(Ref="PIOTHERES MACULATUS", Spp="Tumidotheres maculatus")
spp.key[spp=="Tumidotheres maculatus",
':='(
spp="Tumidotheres maculatus",
genus="Tumidotheres",
species="Tumidotheres maculatus",
common="squatter pea crab",
taxLvl="species",
Picture="y",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=454715",
website2="http://sealifebase.org/summary/Tumidotheres-maculatus.html",
flag="manual"
)
]
ref2spp(Ref="DROMIDIA ATILLESIS", Spp="Moreiradromia antillensis")
spp.key[spp=="Moreiradromia antillensis",
':='(
spp="Moreiradromia antillensis",
species="Moreiradromia antillensis",
genus="Moreiradromia",
common="sponge crab",
taxLvl="species",
Picture="y",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=241025",
flag="manual"
)
]
ref2spp(Ref="MICROPHRYS ANTILLENSIS", Spp="Microphrys antillensis")
spp.key[spp=="Microphrys antillensis",
':='(
spp="Microphrys antillensis",
species="Microphrys antillensis",
genus="Microphrys",
taxLvl="species",
common="lobed decorator crab",
website="http://www.sealifebase.org/summary/Microphrys-antillensis.html",
flag="manual"
)
]
ref2spp(Ref="Cyclocardia sp. cf. borealis (Clark 2006)", Spp="Cyclocardia borealis")
spp.key[spp=="Cyclocardia borealis",
':='(
spp="Cyclocardia borealis",
species="Cyclocardia borealis",
genus="Cyclocardia",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=156832",
flag="manual"
)
]
ref2spp(Ref="EPINEPHELUS MYSTACINUS", Spp="Hyporthodus mystacinus")
spp.key[spp=="Hyporthodus mystacinus",
':='(
spp="Hyporthodus mystacinus",
species="Hyporthodus mystacinus",
genus="Hyporthodus",
taxLvl="species",
common="misty grouper",
Picture="y",
trophicLevel=4.6,
trophicLevel.se=0,
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=273861",
website2="http://www.fishbase.org/summary/Hyporthodus-mystacinus.html",
flag="manual"
)
]
ref2spp(Ref="ETMOPTERUS BULLISI", Spp="Etmopterus bullisi")
spp.key[spp=="Etmopterus bullisi",
':='(
spp="Etmopterus bullisi",
species="Etmopterus bullisi",
genus="Etmopterus",
taxLvl="species",
common="lined lanternshark",
trophicLevel=4.2,
trophicLevel.se=0.4,
Picture="y",
website="http://www.fishbase.org/summary/676",
flag="manual"
)
]
ref2spp(Ref="GOBIOSOMA HORSTI", Spp="Elacatinus horsti")
spp.key[spp=="Elacatinus horsti",
':='(
spp="Elacatinus horsti",
species="Elacatinus horsti",
genus="Elacatinus",
taxLvl="species",
common="yellowline goby",
Picture="y",
trophicLevel=3.5,
trophicLevel.se=0.4,
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=309575",
website2="http://www.fishbase.org/summary/3873",
flag="manual"
)
]
spp.key[spp=="Gorgonocephalus arcticus", order:="Phrynophiurida"]
ref2spp(Ref="Gorgonocephalus sp. cf. arcticus", Spp="Gorgonocephalus arcticus")
spp.key[spp=="Gorgonocephalus arcticus",
':='(
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=124966",
flag="manual"
)
]
ref2spp(Ref="GORGONOCEPHALUS LAMARCKI", Spp="Gorgonocephalus lamarckii")
spp.key[spp=="Gorgonocephalus lamarckii",
':='(
spp="Gorgonocephalus lamarckii",
species="Gorgonocephalus lamarckii",
genus="Gorgonocephalus",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=416670",
flag="manual"
)
]
ref2spp(Ref="MONACANTHUS CILIATUS", Spp="Monacanthus ciliatus")
spp.key[spp=="Monacanthus ciliatus",
':='(
website="http://www.fishbase.org/summary/4280",
flag="manual"
)
]
}
rBatt/trawlData documentation built on May 26, 2019, 7:45 p.m.
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#' Manual entries to species key
#' Manually add or correct species names, taxonomic, ecological, or reference information for spp.key
#'
#' @param spp.key the spp.key data.table contained in this package
createSppKey_manual <- function(spp.key){
# ======================
# = Manual Corrections =
# ======================
check.and.set(wrong="Moira atropus", corrected="Moira atropos")
spp.key[spp=="Moira atropos",
':='(
taxLvl="species",
species="Moira atropos",
genus="Moira",
website="http://www.marinespecies.org/echinoidea/aphia.php?p=taxdetails&id=158067",
flag="manual"
)
]
check.and.set(wrong="Centropristis ocyurus", corrected="Centropristis ocyurus")
spp.key[spp=="Centropristis ocyurus",
':='(
taxLvl="species",
species="Centropristis ocyurus",
genus="Centropristis",
common="Bank sea bass",
Picture="y",
trophicLevel=3.5,
trophicLevel.se=0.53,
website="http://www.fishbase.org/summary/3316",
flag="manual"
)
]
check.and.set(wrong="Mustellus canis", corrected="Mustelus canis")
spp.key[spp=="Mustelus canis",
':='(
taxLvl="species",
common="Dusky smooth-hound",
Picture="y",
trophicLevel=3.6,
# trophicLevel.se=0.2,
website="http://www.fishbase.org/summary/Mustelus-canis.html",
flag="manual"
)
]
check.and.set(wrong="Phenacoscorpius nebris", corrected="Phenacoscorpius nebris")
spp.key[spp=="Phenacoscorpius nebris",
':='(
taxLvl="species",
species="Phenacoscorpius nebris",
genus="Phenacoscorpius",
common="Short-tube scorpionfish",
Picture="y",
trophicLevel=3.5,
trophicLevel.se=0.6,
website="http://www.fishbase.org/summary/12454",
flag="manual"
)
]
check.and.set(wrong="Synagrops bellus", corrected="Synagrops bellus")
spp.key[spp=="Synagrops bellus",
':='(
taxLvl="species",
species="Synagrops bellus",
genus="Synagrops",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=159584",
flag="manual"
)
]
check.and.set(wrong="Synagrops microlepis", corrected="Synagrops microlepis")
spp.key[spp=="Synagrops microlepis",
':='(
taxLvl="species",
species="Synagrops microlepis",
genus="Synagrops",
common="Thinlip splitfin",
Picture="y",
trophicLevel=3.2,
trophicLevel.se=0.37,
website="http://www.fishbase.org/summary/5059",
flag="manual"
)
]
ref2spp(Ref="EZUMIA BAIRDII", Spp="Nezumia bairdii")
spp.key[spp=="Nezumia bairdii",
':='(
spp="Nezumia bairdii",
taxLvl="species",
genus="Nezumia",
species="Nezumia bairdii",
trophicLevel=3.3,
trophicLevel.se=0.1,
Picture="y",
common="Marlin-spike",
website="http://www.fishbase.org/summary/3104",
flag="manual"
)
]
ref2spp(Ref="PORTUNUS FLORIDANUS", Spp="Achelous floridanus")
spp.key[spp=="Achelous floridanus",
':='(
spp="Achelous floridanus",
taxLvl="species",
species="Achelous floridanus",
genus="Achelous",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=557882",
flag="manual"
)
]
ref2spp(Ref="ASTROPECTE COMPTUS", Spp="Astropecten comptus")
spp.key[spp=="Astropecten comptus",
':='(
spp="Astropecten comptus",
taxLvl="species",
genus="Astropecten",
species="Astropecten comptus",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=178649",
flag="manual"
)
]
ref2spp(Ref="BATHYPTEROIS BIGELOWI", Spp="Bathypterois bigelowi")
spp.key[spp=="Bathypterois bigelowi",
':='(
spp="Bathypterois bigelowi",
taxLvl="species",
genus="Bathypterois",
species="Bathypterois bigelowi",
website="http://www.fishbase.org/summary/Bathypterois-bigelowi.html",
Picture="y",
flag="manual"
)
]
ref2spp(Ref="PENNATULA BOREALIS", Spp="Pennatula grandis")
spp.key[spp=="Pennatula grandis",
':='(
spp="Pennatula grandis",
taxLvl="species",
genus="Pennatula",
species="Pennatula grandis",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=128516",
flag="manual"
)
]
check.and.set(wrong="Bollmannia communis", corrected="Bollmannia communis")
spp.key[spp=="Bollmannia communis",
':='(
spp="Bollmannia communis",
taxLvl="species",
genus="Bollmannia",
species="Bollmannia communis",
flag="manual"
)
]
ref2spp(Ref="Brisaster townsendi", Spp="Brisaster townsendi")
spp.key[spp=="Brisaster townsendi",
':='(
spp="Brisaster townsendi",
taxLvl="species",
genus="Brisaster",
species="Brisaster townsendi",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=513144",
flag="manual"
)
]
ref2spp(Ref="Buccinum transliratum", Spp="Buccinum angulosum")
spp.key[spp=="Buccinum angulosum",
':='(
spp="Buccinum angulosum",
common="angular whelk",
family="Buccinidae",
order="Neogastropoda",
class="Gastropoda",
phylum="Mollusca",
kingdom="Animalia",
taxLvl="species",
genus="Buccinum",
species="Buccinum angulosum",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=138858",
flag="manual"
)
]
ref2spp(Ref="CHILOMYCTERUS ATINGA", Spp="Chilomycterus reticulatus")
spp.key[spp=="Chilomycterus reticulatus",
':='(
spp="Chilomycterus reticulatus",
common="spotfin burrfish",
taxLvl="species",
genus="Chilomycterus",
species="Chilomycterus reticulatus",
trophicLevel=3.45, # should just be 3.5?
trophicLevel.se=0.41,
Picture="y",
website="http://www.fishbase.org/summary/Chilomycterus-reticulatus.html",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=403539",
flag="manual"
)
]
ref2spp(Ref="CHLAMYS SETIS", Spp="Caribachlamys sentis")
spp.key[spp=="Caribachlamys sentis",
':='(
spp="Caribachlamys sentis",
taxLvl="species",
genus="Caribachlamys",
species="Caribachlamys sentis",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=393711",
flag="manual"
)
]
ref2spp(Ref="Colus hypolispus", Spp="Latisipho hypolispus")
spp.key[spp=="Latisipho hypolispus",
':='(
spp="Latisipho hypolispus",
taxLvl="species",
genus="Latisipho",
species="Latisipho hypolispus",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=491062",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=254476",
flag="manual"
)
]
ref2spp(Ref="CYCLOTHONE BRAUERI", Spp="Cyclothone braueri")
spp.key[spp=="Cyclothone braueri",
':='(
spp="Cyclothone braueri",
taxLvl="species",
common="Garrick",
genus="Cyclothone",
species="Cyclothone braueri",
family="Gonostomatidae",
order="Stomiiformes",
class="Actinopterygii",
trophicLevel=3.1,
trophicLevel.se=0.18,
Picture="y",
website="http://www.fishbase.de/summary/Cyclothone-braueri.html",
flag="manual"
)
]
ref2spp(Ref="DIAPHUS SPLEDIDUS", Spp="Diaphus splendidus")
spp.key[spp=="Diaphus splendidus",
':='(
spp="Diaphus splendidus",
taxLvl="species",
common="Horned lanternfish",
genus="Diaphus",
species="Diaphus splendidus",
family="Myctophidae",
order="Myctophiformes",
class="Actinopterygii",
trophicLevel=3.0,
trophicLevel.se=0,
Picture="y",
website="http://www.fishbase.org/summary/10174",
flag="manual"
)
]
ref2spp(Ref="DISTORSIO MCGITYI", Spp="Distorsio constricta mcgintyi")
spp.key[spp=="Distorsio constricta mcgintyi",
':='(
spp="Distorsio constricta mcgintyi",
taxLvl="species",
genus="Distorsio",
species="Distorsio constricta",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=422768",
flag="manual"
)
]
ref2spp(Ref="LEPIDOPA BEEDICTI", Spp="Lepidopa benedicti")
spp.key[spp=="Lepidopa benedicti",
':='(
spp="Lepidopa benedicti",
genus="Lepidopa",
species="Lepidopa benedicti",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=421881",
flag="manual"
)
]
spp.key[spp=="Hyporthodus niveatus",subphylum:="Vertebrata"]
setkey(spp.key, spp, ref)
ref2spp(Ref="EPINEPHELUS NIVEATUS", Spp="Hyporthodus niveatus")
spp.key[spp=="Hyporthodus niveatus",
':='(
spp="Hyporthodus niveatus",
genus="Hyporthodus",
species="Hyporthodus niveatus",
common="snowy grouper",
family="Serranidae",
order="Perciformes",
class="Actinopteri",
superclass="Osteichthyes",
subphylum="Vertebrata",
phylum="Chordata",
kingdom="Animalia",
trophicDiet="n",
trophicOrig="y",
taxLvl="species",
trophicLevel=4.04,
trophicLevel.se=0.58,
Picture="y",
flag="manual"
)
]
ref2spp(Ref="EQUETUS ACUMINATUS", Spp="Pareques acuminatus")
spp.key[spp=="Pareques acuminatus",
':='(
spp="Pareques acuminatus",
genus="Pareques",
species="Pareques acuminatus",
taxLvl="species",
common="high-hat",
family="Sciaenidae",
order="Perciformes",
class="Actinopterygii",
superclass="Osteichthyes",
subphylum="Vertebrata",
phylum="Chordata",
kingdom="Animalia",
trophicDiet="y",
trophicOrig="y",
Picture="y",
trophicLevel=3.59,
trophicLevel.se=0.46,
flag="manual"
)
]
ref2spp(Ref="ETMOPTERUS VIRES", spp="Etmopterus virens")
spp.key[spp=="Etmopterus virens",
':='(
spp="Etmopterus virens",
genus="Etmopterus",
species="Etmopterus virens",
common="green lantern shark",
trophicLevel=4.2,
trophicLevel.se=0.73,
Picture="y",
website="http://www.fishbase.org/summary/690",
flag="manual"
)
]
ref2spp(Ref="LUIDIA ELEGAS", Spp="Luidia sarsii elegans")
spp.key[spp=="Luidia sarsii elegans",
':='(
spp="Luidia sarsii elegans",
genus="Luidia",
species="Luidia sarsii",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=752124",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=368112",
flag="manual"
)
]
ref2spp(Ref="HALICHOERES RADIATUS", Spp="Halichoeres radiatus")
spp.key[spp=="Halichoeres radiatus",
':='(
spp="Halichoeres radiatus",
genus="Halichoeres",
species="Halichoeres radiatus",
taxLvl="species",
common="Puddingwife wrasse",
trophicLevel=3.5,
trophicLevel.se=0.1,
Picture="y",
website="http://www.fishbase.org/summary/1068",
flag="manual"
)
]
ref2spp(Ref="Henricia aleutica", Spp="Henricia longispina aleutica")
spp.key[spp=="Henricia longispina aleutica",
':='(
spp="Henricia longispina aleutica",
genus="Henricia",
species="Henricia longispina",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=369124",
flag="manual"
)
]
ref2spp(Ref="ALUTERUS HEUDELOTTI", Spp="Aluterus heudelotii")
ref2spp(Ref="ALUTERUS HEUDELOTI", Spp="Aluterus heudelotii")
spp.key[spp=="Aluterus heudelotii",
':='(
common="Dotterel filefish",
taxLvl="species",
genus="Aluterus",
species="Aluterus heudelotii",
family="Monacanthidae",
order="Tetraodontiformes",
class="Actinopteri",
superclass="Actinopterygii",
subphylum="Craniata",
phylum="Chordata",
kingdom="Metazoa",
Picture="y",
trophicLevel=2.0,
trophicLevel.se=0,
website="http://www.fishbase.org/summary/4273",
flag="manual"
)
]
ref2spp(Ref="ALPHEUS ARMATUS", Spp="Alpheus armatus")
spp.key[spp=="Alpheus armatus",
':='(
spp="Alpheus armatus",
taxLvl="species",
genus="Alpheus",
species="Alpheus armatus",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=421729",
flag="manual"
)
]
ref2spp(Ref="COOKEOLUS JAPONICUS", Spp="Cookeolus japonicus")
spp.key[spp=="Cookeolus japonicus",
':='(
species="Cookeolus japonicus",
genus="Cookeolus",
taxLvl="species",
common="Longfinned bullseye",
Picture="y",
trophicLevel=3.5,
trophicLevel.se=0.6,
website="http://www.fishbase.org/summary/3517",
flag="manual"
)
]
ref2spp(Ref="APRISTURUS IDICUS", Spp="Apristurus indicus")
spp.key[spp=="Apristurus indicus",
':='(
spp="Apristurus indicus",
species="Apristurus indicus",
genus="Apristurus",
taxLvl="species",
common="Smallbelly catshark",
trophicLevel=3.7,
trophicLevel.se=0.3,
Picture="y",
website="http://www.fishbase.org/Summary/speciesSummary.php?ID=766&AT=Kleinbuikkathaai",
flag="manual"
)
]
ref2spp(Ref="Arctomelon sp. cf. stearnsii (Clark & McLean)", Spp="Arctomelon stearnsii")
spp.key[ref=="Arctomelon sp. cf. stearnsii (Clark & McLean)",
':='(
spp="Arctomelon stearnsii",
species="Arctomelon stearnsii",
genus="Arctomelon",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=384681",
flag="manual"
)
]
ref2spp(Ref="ASTARTE GLOBULA", Spp="Astarte globula")
spp.key[ref=="ASTARTE GLOBULA",
':='(
spp="Astarte globula",
species="Astarte globula",
genus="Astarte",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=420839",
flag="manual"
)
]
ref2spp(Ref="BUSYCO CARICA", Spp="Busycon carica")
spp.key[spp=="Busycon carica",
':='(
spp="Busycon carica",
genus="Busycon",
species="Busycon carica",
taxLvl="species",
Picture="y",
common="Knobbed whelk",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=160185",
website2="http://www.sealifebase.org/summary/Busycon-carica.html",
flag="manual"
)
]
ref2spp(Ref="CALAMUS PENNA", Spp="Cabdio penna")
ref2spp(Ref="CALAMUS PEA", Spp="Cabdio penna")
spp.key[spp=="Cabdio penna",
':='(
spp="Cabdio penna",
genus="Cabdio",
species="Cabdio penna",
taxLvl="species",
common="Sheepshead porgy",
Picture="y",
trophicLevel=4.4,
trophicLevel.se=0.2,
website="http://www.fishbase.org/summary/1227",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=159245",
flag="manual"
)
]
ref2spp(Ref="CALLIECTES DAAE", Spp="Callinectes danae")
spp.key[spp=="Callinectes danae",
':='(
spp="Callinectes danae",
genus="Callinectes",
species="Callinectes danae",
taxLvl="species",
common="Dana swimming crab",
trophicLevel=3.63,
trophicLevel.se=0.43,
Picture="y",
website="http://www.sealifebase.org/summary/Callinectes-danae.html",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=107378"
)
]
ref2spp(Ref="Buccinum triplostephanum", Spp="Volutopsion castaneum")
spp.key[spp=="Volutopsion castaneum",
':='(
species="Volutopsion castaneum",
genus="Volutopsion",
taxLvl="species",
common="chestnut whelk",
website="http://arctos.database.museum/name/Buccinum%20castaneum%20triplostephanum",
website2="http://www.sealifebase.org/summary/Volutopsion-castaneum.html",
flag="manual"
)
]
ref2spp(Ref="BUSYCO CAALICULATUM", Spp="Busycotypus canaliculatus")
spp.key[spp=="Busycotypus canaliculatus",
':='(
spp="Busycotypus canaliculatus",
species="Busycotypus canaliculatus",
genus="Busycotypus",
taxLvl="species",
common="Channeled whelk",
Picture="y",
trophicLevel=3.23,
trophicLevel.se=0.17,
website="http://arctos.database.museum/name/Busycon%20canaliculatum",
website2="http://www.sealifebase.org/summary/Busycotypus-canaliculatus.html",
flag="manual"
)
]
ref2spp(Ref="BUSYCO SIISTRUM", Spp="Sinistrofulgur sinistrum")
spp.key[spp=="Sinistrofulgur sinistrum",
':='(
spp="Sinistrofulgur sinistrum",
species="Sinistrofulgur sinistrum",
genus="Sinistrofulgur",
taxLvl="species",
common="Lightning whelk",
Picture="y",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=160189",
website2="http://sealifebase.org/summary/Busycon-sinistrum.html",
flag="manual"
)
]
ref2spp(Ref="CALAPPA AGUSTA", Spp="Hepatus pudibundus")
spp.key[spp=="Hepatus pudibundus", # the correct species name should already be in spp.key
':='(
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=452047",
website2="http://www.sealifebase.org/summary/Hepatus-pudibundus.html"
)
]
ref2spp(Ref="GOOSTOMA ATLATICUM", Spp="Gonostoma atlanticum")
spp.key[spp=="Gonostoma atlanticum",
':='(
spp="Gonostoma atlanticum",
species="Gonostoma atlanticum",
genus="Gonostoma",
common="Atlantic fangjaw",
taxLvl="species",
trophicLevel=3.0,
trophicLevel.se=0.13,
Picture="y",
website="http://www.fishbase.org/summary/5052",
flag="manual"
)
]
ref2spp(Ref="Careproctus sp. cf. rastrinus (Orr et al.)", Spp="Careproctus rastrinus")
spp.key[spp=="Careproctus rastrinus",
':='(
Picture="y",
website="http://www.fishbase.org/summary/Careproctus-rastrinus.html",
flag="manual"
)
]
ref2spp(Ref="Careproctus sp. cf. gilberti (Orr)", Spp="Careproctus gilberti")
spp.key[spp=="Careproctus gilberti",
':='(
trophicLevel=3.2,
trophicLevel.se=0.5,
Picture="y",
website="http://www.fishbase.org/summary/25161",
flag="manual"
)
]
ref2spp(Ref="Careproctus lycopersicus", Spp="Careproctus lycopersicus")
spp.key[spp=="Careproctus lycopersicus",
':='(
spp="Careproctus lycopersicus",
species="Careproctus lycopersicus",
genus="Careproctus",
common="tomato snailfish",
taxLvl="species",
trophicLevel=3.2,
trophicLevel.se=0.5,
website="http://www.fishbase.org/summary/67403",
flag="manual"
)
]
ref2spp(Ref="COUS DAUCUS", Spp="Conus daucus")
spp.key[spp=="Conus daucus",
':='(
spp="Conus daucus",
species="Conus daucus",
genus="Conus",
taxLvl="species",
common="carrot cone",
Picture="y",
website="http://www.sealifebase.org/summary/Conus-daucus.html",
flag="manual"
)
]
ref2spp(Ref="ICTALURUS FURCATUS", Spp="Ictalurus furcatus")
spp.key[spp=="Ictalurus furcatus", # freshwater/ brackish species!!
':='(
spp="Ictalurus furcatus",
species="Ictalurus furcatus",
genus="Ictalurus",
taxLvl="species",
common="blue catfish",
trophicLevel=3.4,
trophicLevel.se=0.44,
Picture="y",
website="http://www.fishbase.org/summary/3019",
flag="manual"
)
]
ref2spp(Ref="CYPSELURUS MELANURUS", Spp="Cheilopogon melanurus")
spp.key[spp=="Cheilopogon melanurus",
':='(
spp="Cheilopogon melanurus",
species="Cheilopogon melanurus",
genus="Cheilopogon",
taxLvl="species",
Picture="y",
trophicLevel=3.6,
trophicLevel.se=0.5,
website="http://www.fishbase.org/summary/cheilopogon-melanurus.html",
website2="http://www.marinespecies.org/aphia.php?p=taxdetails&id=312468",
flag="manual"
)
]
ref2spp(Ref="Chrysaora fuscens", Spp="Chrysaora fuscescens")
spp.key[spp=="Chrysaora fuscescens",
':='(
spp="Chrysaora fuscescens",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=287206",
flag="manual"
)
]
ref2spp(Ref="LIMA SCABRA", Spp="Ctenoides scaber")
spp.key[spp=="Ctenoides scaber",
':='(
spp="Ctenoides scaber",
genus="Ctenoides",
species="Ctenoides scaber",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=420747",
website2="http://www.sealifebase.org/summary/Ctenoides-scaber.html",
Picture="y",
flag="manual"
)
]
ref2spp(Ref="PIOTHERES MACULATUS", Spp="Tumidotheres maculatus")
spp.key[spp=="Tumidotheres maculatus",
':='(
spp="Tumidotheres maculatus",
genus="Tumidotheres",
species="Tumidotheres maculatus",
common="squatter pea crab",
taxLvl="species",
Picture="y",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=454715",
website2="http://sealifebase.org/summary/Tumidotheres-maculatus.html",
flag="manual"
)
]
ref2spp(Ref="DROMIDIA ATILLESIS", Spp="Moreiradromia antillensis")
spp.key[spp=="Moreiradromia antillensis",
':='(
spp="Moreiradromia antillensis",
species="Moreiradromia antillensis",
genus="Moreiradromia",
common="sponge crab",
taxLvl="species",
Picture="y",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=241025",
flag="manual"
)
]
ref2spp(Ref="MICROPHRYS ANTILLENSIS", Spp="Microphrys antillensis")
spp.key[spp=="Microphrys antillensis",
':='(
spp="Microphrys antillensis",
species="Microphrys antillensis",
genus="Microphrys",
taxLvl="species",
common="lobed decorator crab",
website="http://www.sealifebase.org/summary/Microphrys-antillensis.html",
flag="manual"
)
]
ref2spp(Ref="Cyclocardia sp. cf. borealis (Clark 2006)", Spp="Cyclocardia borealis")
spp.key[spp=="Cyclocardia borealis",
':='(
spp="Cyclocardia borealis",
species="Cyclocardia borealis",
genus="Cyclocardia",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=156832",
flag="manual"
)
]
ref2spp(Ref="EPINEPHELUS MYSTACINUS", Spp="Hyporthodus mystacinus")
spp.key[spp=="Hyporthodus mystacinus",
':='(
spp="Hyporthodus mystacinus",
species="Hyporthodus mystacinus",
genus="Hyporthodus",
taxLvl="species",
common="misty grouper",
Picture="y",
trophicLevel=4.6,
trophicLevel.se=0,
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=273861",
website2="http://www.fishbase.org/summary/Hyporthodus-mystacinus.html",
flag="manual"
)
]
ref2spp(Ref="ETMOPTERUS BULLISI", Spp="Etmopterus bullisi")
spp.key[spp=="Etmopterus bullisi",
':='(
spp="Etmopterus bullisi",
species="Etmopterus bullisi",
genus="Etmopterus",
taxLvl="species",
common="lined lanternshark",
trophicLevel=4.2,
trophicLevel.se=0.4,
Picture="y",
website="http://www.fishbase.org/summary/676",
flag="manual"
)
]
ref2spp(Ref="GOBIOSOMA HORSTI", Spp="Elacatinus horsti")
spp.key[spp=="Elacatinus horsti",
':='(
spp="Elacatinus horsti",
species="Elacatinus horsti",
genus="Elacatinus",
taxLvl="species",
common="yellowline goby",
Picture="y",
trophicLevel=3.5,
trophicLevel.se=0.4,
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=309575",
website2="http://www.fishbase.org/summary/3873",
flag="manual"
)
]
spp.key[spp=="Gorgonocephalus arcticus", order:="Phrynophiurida"]
ref2spp(Ref="Gorgonocephalus sp. cf. arcticus", Spp="Gorgonocephalus arcticus")
spp.key[spp=="Gorgonocephalus arcticus",
':='(
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=124966",
flag="manual"
)
]
ref2spp(Ref="GORGONOCEPHALUS LAMARCKI", Spp="Gorgonocephalus lamarckii")
spp.key[spp=="Gorgonocephalus lamarckii",
':='(
spp="Gorgonocephalus lamarckii",
species="Gorgonocephalus lamarckii",
genus="Gorgonocephalus",
taxLvl="species",
website="http://www.marinespecies.org/aphia.php?p=taxdetails&id=416670",
flag="manual"
)
]
ref2spp(Ref="MONACANTHUS CILIATUS", Spp="Monacanthus ciliatus")
spp.key[spp=="Monacanthus ciliatus",
':='(
website="http://www.fishbase.org/summary/4280",
flag="manual"
)
]
}
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