KNN: Getting cluster numbers for each of the nearest neighbor of a...

In reggenlab/UniPath: UniPath provides robust statistical methods to represent every single cell using pathway and gene-set enrichment scores. It can be used with both single cell RNA-seq and single cell ATAC-seq profile with scalability for atlas scale data-sets. Unipath comes with several features like psuedo-temporal ordering using pathway scores and unconventional way of enumerating differences between two cell populations.

Description

Getting cluster numbers for each of the nearest neighbor of a cell

Usage

KNN(pathwayscores, index, clusters)

Arguments

pathwayscores	Raw adjusted p-value matrix
index	indices of nearest neighbours obtained from index function
clusters	Clusters obtained from hierarchal clustering

Value

Matrix having cluster or class number for each of the top nearest neighbor of individual cell

Examples

KNN()

reggenlab/UniPath documentation built on Nov. 26, 2020, 8:09 a.m.