temporaldif: Differential Pathways

In reggenlab/UniPath: UniPath provides robust statistical methods to represent every single cell using pathway and gene-set enrichment scores. It can be used with both single cell RNA-seq and single cell ATAC-seq profile with scalability for atlas scale data-sets. Unipath comes with several features like psuedo-temporal ordering using pathway scores and unconventional way of enumerating differences between two cell populations.

Description

Differential Pathways

Usage

temporaldif(data, group)

Arguments

data	adjusted raw p-value matrix
group	group of cell types among which differential pathway analysis needs to be performed.

Value

A list containing p-value based on wilcoxon rank sum test, fold change based on mean and median

Examples

temporaldif()

reggenlab/UniPath documentation built on Nov. 26, 2020, 8:09 a.m.