class1: Finding how many times nearest neighbor of cells in each...

In reggenlab/UniPath: UniPath provides robust statistical methods to represent every single cell using pathway and gene-set enrichment scores. It can be used with both single cell RNA-seq and single cell ATAC-seq profile with scalability for atlas scale data-sets. Unipath comes with several features like psuedo-temporal ordering using pathway scores and unconventional way of enumerating differences between two cell populations.

Description

Finding how many times nearest neighbor of cells in each class are belonging to different cluster or class.

Usage

class1(clusters, KNN)

Arguments

KNN	Matrix obtained from KNN function with cluster number for top nearest neighbors for each of the cell
Clusters	obtained from hierarchal clustering

Value

Matrix with number of times cells in same class have top k neighbors in other classes

Examples

class1()

reggenlab/UniPath documentation built on Nov. 26, 2020, 8:09 a.m.