combine: Combining P values

In reggenlab/UniPath: UniPath provides robust statistical methods to represent every single cell using pathway and gene-set enrichment scores. It can be used with both single cell RNA-seq and single cell ATAC-seq profile with scalability for atlas scale data-sets. Unipath comes with several features like psuedo-temporal ordering using pathway scores and unconventional way of enumerating differences between two cell populations.

Description

Combining P values

Usage

combine(gene_file, expression_matrix, gnames, Pval1)

Arguments

gene_file	Pre compiled pathway annotation file
expression_matrix	gene expression matrix
gnames	rownames of gene expression matrix
Pval1	P-value matrix obtained using binorm

Value

Combined P-value matrix

Examples

combine()

reggenlab/UniPath documentation built on Nov. 26, 2020, 8:09 a.m.