nearest_gene: Generation of foreground file

In reggenlab/UniPath: UniPath provides robust statistical methods to represent every single cell using pathway and gene-set enrichment scores. It can be used with both single cell RNA-seq and single cell ATAC-seq profile with scalability for atlas scale data-sets. Unipath comes with several features like psuedo-temporal ordering using pathway scores and unconventional way of enumerating differences between two cell populations.

Description

Generation of foreground file

Usage

nearest_gene(arg1, arg2, arg3, arg4)

Arguments

arg1	genomic coordinate file
arg2	human reference genome file
arg3	output file

Value

foreground file

Examples

nearest_gene()

reggenlab/UniPath documentation built on Nov. 26, 2020, 8:09 a.m.