global_access: Global accessibility score calculation

In reggenlab/UniPath: UniPath provides robust statistical methods to represent every single cell using pathway and gene-set enrichment scores. It can be used with both single cell RNA-seq and single cell ATAC-seq profile with scalability for atlas scale data-sets. Unipath comes with several features like psuedo-temporal ordering using pathway scores and unconventional way of enumerating differences between two cell populations.

Description

Global accessibility score calculation

Usage

global_access(testfile, referencefile, globalaccess_scores)

Arguments

testfile	3 column peak file of genomic coordinates for test data
referencefile	3 column peak file of genomic coordinates for reference data
globalaccess_scores	pre-calculated global accessibility scores

Value

global accessibility scores for test data

Examples

global_access()

reggenlab/UniPath documentation built on Nov. 26, 2020, 8:09 a.m.