gradient: Showing gradient or continuum of pathways on minimum spanning...

In reggenlab/UniPath: UniPath provides robust statistical methods to represent every single cell using pathway and gene-set enrichment scores. It can be used with both single cell RNA-seq and single cell ATAC-seq profile with scalability for atlas scale data-sets. Unipath comes with several features like psuedo-temporal ordering using pathway scores and unconventional way of enumerating differences between two cell populations.

Description

Showing gradient or continuum of pathways on minimum spanning tree

Usage

gradient(pathwayfile, term)

Arguments

pathwayfile	adjusted p-value matrix
term	Pathway term for which gradient needs to be plotted

Value

gradient of colors for specific pathway term

Examples

gradient()

reggenlab/UniPath documentation built on Nov. 26, 2020, 8:09 a.m.