index: Finding K nearest neighbour

In reggenlab/UniPath: UniPath provides robust statistical methods to represent every single cell using pathway and gene-set enrichment scores. It can be used with both single cell RNA-seq and single cell ATAC-seq profile with scalability for atlas scale data-sets. Unipath comes with several features like psuedo-temporal ordering using pathway scores and unconventional way of enumerating differences between two cell populations.

Description

Finding K nearest neighbour

Usage

index(pathwayscores, k = 5)

Arguments

pathwayscores	Raw adjusted p-value matrix
k	Number of k nearest neighbour for each sample or cell

Value

matrix of indices of nearest neighbour

Examples

index()

reggenlab/UniPath documentation built on Nov. 26, 2020, 8:09 a.m.