R/nearest_gene.R
In reggenlab/UniPath: UniPath provides robust statistical methods to represent every single cell using pathway and gene-set enrichment scores. It can be used with both single cell RNA-seq and single cell ATAC-seq profile with scalability for atlas scale data-sets. Unipath comes with several features like psuedo-temporal ordering using pathway scores and unconventional way of enumerating differences between two cell populations.
Defines functions
nearest_gene
Documented in
nearest_gene
#' Generation of foreground file
#'
#' @param arg1 nearestGenes.pl script
#' @param arg2 genomic coordinate file
#' @param arg3 human reference genome file
#' @param arg4 output file
#'
#' @return foreground file
#' @export
#'
#' @examples
#' nearest_gene()
nearest_gene = function(arg1,arg2,arg3,arg4){
cmd <- paste("perl", arg1, arg2, arg3, arg4)
return(cmd)
}
reggenlab/UniPath documentation built on Nov. 26, 2020, 8:09 a.m.
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Defines functions nearest_gene
Documented in nearest_gene
#' Generation of foreground file
#'
#' @param arg1 nearestGenes.pl script
#' @param arg2 genomic coordinate file
#' @param arg3 human reference genome file
#' @param arg4 output file
#'
#' @return foreground file
#' @export
#'
#' @examples
#' nearest_gene()
nearest_gene = function(arg1,arg2,arg3,arg4){
cmd <- paste("perl", arg1, arg2, arg3, arg4)
return(cmd)
}
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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